Variant report

Variant	rs6746691
Chromosome Location	chr2:33814331-33814332
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33813884..33820375-chr2:33821086..33825904,10	K562	blood:
2	chr2:33809873..33812031-chr2:33813225..33815224,4	K562	blood:
3	chr2:33814233..33816944-chr2:33823198..33825061,2	K562	blood:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10180232	0.91[ASN][1000 genomes]
rs10185437	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10188211	0.91[ASN][1000 genomes]
rs10514775	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12328041	0.80[ASN][1000 genomes]
rs12470399	0.86[CHB][hapmap]
rs12471027	0.91[ASN][1000 genomes]
rs12478596	0.86[CHB][hapmap]
rs12478742	0.86[CHB][hapmap]
rs13001536	0.91[ASN][1000 genomes]
rs13030968	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13397381	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1947179	0.83[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2004037	1.00[ASN][1000 genomes]
rs28670807	0.80[ASN][1000 genomes]
rs3213961	0.84[CEU][hapmap];0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs35909307	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4627543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59479233	1.00[ASN][1000 genomes]
rs60739635	0.91[ASN][1000 genomes]
rs62147461	0.94[ASN][1000 genomes]
rs62147464	0.94[ASN][1000 genomes]
rs62147465	0.94[ASN][1000 genomes]
rs62149034	0.97[ASN][1000 genomes]
rs62150475	1.00[ASN][1000 genomes]
rs62150505	1.00[ASN][1000 genomes]
rs62150506	1.00[ASN][1000 genomes]
rs62150508	1.00[ASN][1000 genomes]
rs6708	1.00[JPT][hapmap]
rs6713874	0.80[ASN][1000 genomes]
rs6742257	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6757910	0.86[ASN][1000 genomes]
rs72785990	0.97[ASN][1000 genomes]
rs7561151	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7574183	0.86[CHB][hapmap]
rs7586013	0.89[ASN][1000 genomes]
rs7588728	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7593383	0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6746691	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33803800-33822200	Weak transcription	Right Atrium	heart
3	chr2:33807000-33818200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr2:33807000-33820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:33807400-33817600	Weak transcription	Fetal Brain Male	brain
6	chr2:33807600-33821000	Strong transcription	NH-A	brain
7	chr2:33807800-33822800	Weak transcription	Stomach Mucosa	stomach
8	chr2:33808200-33814600	Strong transcription	NHDF-Ad	bronchial
9	chr2:33808200-33820600	Strong transcription	Dnd41	blood
10	chr2:33808400-33822600	Weak transcription	Fetal Heart	heart
11	chr2:33808600-33818800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr2:33808600-33820200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr2:33808600-33820400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr2:33808600-33820400	Strong transcription	HUVEC	blood vessel
15	chr2:33808600-33820600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:33808600-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:33808600-33821000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:33808800-33814600	Strong transcription	Liver	Liver
19	chr2:33808800-33815800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr2:33808800-33816600	Strong transcription	A549	lung
21	chr2:33808800-33820400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:33808800-33820400	Strong transcription	Fetal Intestine Large	intestine
23	chr2:33808800-33820800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr2:33808800-33820800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr2:33809000-33820200	Strong transcription	Primary B cells from cord blood	blood
26	chr2:33809000-33820200	Strong transcription	Primary T cells from cord blood	blood
27	chr2:33809000-33820200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:33809000-33820200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr2:33809000-33820600	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr2:33809200-33816600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr2:33809200-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:33809200-33823400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr2:33809400-33814400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr2:33809400-33820200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr2:33810000-33820800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr2:33810400-33817200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr2:33810400-33818000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:33810400-33820000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr2:33810600-33817200	Weak transcription	Pancreas	Pancrea
40	chr2:33810600-33817400	Weak transcription	Esophagus	oesophagus
41	chr2:33810600-33817600	Weak transcription	Spleen	Spleen
42	chr2:33810600-33818800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr2:33810800-33822200	Weak transcription	Gastric	stomach
44	chr2:33810800-33822200	Weak transcription	Right Ventricle	heart
45	chr2:33811000-33816200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr2:33811000-33816600	Weak transcription	Fetal Brain Female	brain
47	chr2:33811000-33817400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr2:33811000-33817600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr2:33811000-33817800	Weak transcription	Colonic Mucosa	Colon
50	chr2:33811000-33818000	Weak transcription	Aorta	Aorta

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