Variant report

Variant	rs62150503
Chromosome Location	chr2:33852860-33852861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11124326	0.90[ASN][1000 genomes]
rs12328041	0.93[ASN][1000 genomes]
rs13030968	0.81[ASN][1000 genomes]
rs2004037	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28670807	0.93[ASN][1000 genomes]
rs59479233	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60739635	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62147461	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62147464	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62147465	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62150475	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62150505	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62150506	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62150508	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6543725	0.92[ASN][1000 genomes]
rs6543726	0.92[ASN][1000 genomes]
rs6713874	0.93[ASN][1000 genomes]
rs7593383	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33845200-33859400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:33845200-33859600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:33851400-33853400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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