Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33829331..33831606-chr2:33844962..33847782,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10514775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11124326	0.92[ASN][1000 genomes]
rs12328041	0.95[ASN][1000 genomes]
rs12470399	0.86[CHB][hapmap]
rs12478596	0.86[CHB][hapmap]
rs12478742	0.86[CHB][hapmap]
rs13030968	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1947179	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs28670807	0.95[ASN][1000 genomes]
rs3213961	0.86[CHB][hapmap]
rs4627543	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62150503	0.92[ASN][1000 genomes]
rs6543725	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708	1.00[JPT][hapmap]
rs6713874	0.95[ASN][1000 genomes]
rs6742257	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6746691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7561151	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7574183	0.86[CHB][hapmap]
rs7593383	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6543726	CAPN13	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
3	chr2:33843400-33845800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr2:33844400-33848200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:33845200-33846200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:33845200-33859400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:33845200-33859600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:33845600-33849400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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