Variant report

Variant	rs2012014
Chromosome Location	chr2:33862493-33862494
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10514775	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs13030968	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1947179	1.00[JPT][hapmap]
rs2367817	0.94[ASN][1000 genomes]
rs4556957	0.94[ASN][1000 genomes]
rs4627543	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6543727	0.98[ASN][1000 genomes]
rs6708	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6717058	0.98[ASN][1000 genomes]
rs6742257	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6746691	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7561151	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7569329	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv963220	chr2:33860909-33862757	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33860400-33862800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:33860400-33862800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:33860600-33863200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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