Variant report

Variant	rs4565770
Chromosome Location	chr1:95565252-95565253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10747462	1.00[CEU][hapmap]
rs10874901	1.00[CEU][hapmap]
rs11165285	1.00[CEU][hapmap]
rs11165290	1.00[CEU][hapmap]
rs11165296	0.81[EUR][1000 genomes]
rs11165301	0.87[EUR][1000 genomes]
rs12022525	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs12036045	0.94[CEU][hapmap]
rs12060761	0.87[EUR][1000 genomes]
rs12082888	1.00[CEU][hapmap]
rs12120694	0.87[EUR][1000 genomes]
rs12127633	0.83[ASN][1000 genomes]
rs12137144	0.94[CEU][hapmap]
rs12408845	1.00[CEU][hapmap]
rs17112867	1.00[CEU][hapmap]
rs4427415	1.00[CEU][hapmap]
rs57001838	0.87[EUR][1000 genomes]
rs7526765	1.00[CEU][hapmap]
rs7540080	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95563200-95566600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:95563600-95567800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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