Variant report

Variant	rs17112867
Chromosome Location	chr1:95467892-95467893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95456796..95459447-chr1:95467601..95470576,2	K562	blood:
2	chr1:95465187..95468061-chr1:95468404..95471127,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10747462	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10874900	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10874901	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11165285	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11165290	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11165291	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11165292	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11165296	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11165301	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12022525	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12036045	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12060761	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12082888	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12120694	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12137144	0.94[CEU][hapmap]
rs12402604	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12408845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17100482	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4427415	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57001838	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60219865	0.82[AFR][1000 genomes]
rs7526765	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7539517	0.97[EUR][1000 genomes]
rs7540080	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7551774	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95452800-95468400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:95453600-95468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:95455200-95473600	Weak transcription	Gastric	stomach
6	chr1:95457000-95468600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:95459600-95473000	Weak transcription	Aorta	Aorta
8	chr1:95459600-95473000	Weak transcription	Pancreas	Pancrea
9	chr1:95460400-95478400	Weak transcription	Left Ventricle	heart
10	chr1:95460600-95468000	Weak transcription	Adipose Nuclei	Adipose
11	chr1:95461200-95469600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr1:95461400-95468000	Weak transcription	NH-A	brain
13	chr1:95463600-95468000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:95463800-95468000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:95464000-95473000	Weak transcription	Lung	lung
16	chr1:95465600-95468000	Weak transcription	HSMMtube	muscle
17	chr1:95465600-95468200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:95466000-95468800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:95466600-95468000	Enhancers	Colon Smooth Muscle	Colon
20	chr1:95466800-95468200	Weak transcription	NHEK	skin
21	chr1:95467000-95469400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:95467400-95468200	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:95467400-95468600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr1:95467400-95468800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:95467400-95469000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr1:95467400-95469000	Enhancers	Duodenum Mucosa	Duodenum
27	chr1:95467400-95469000	Enhancers	Fetal Kidney	kidney
28	chr1:95467400-95469000	Enhancers	Fetal Stomach	stomach
29	chr1:95467600-95468000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr1:95467600-95468000	Enhancers	Right Atrium	heart
31	chr1:95467600-95468200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr1:95467600-95468200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:95467600-95468200	Enhancers	Brain Cingulate Gyrus	brain
34	chr1:95467600-95468200	Enhancers	Fetal Lung	lung
35	chr1:95467600-95468400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:95467600-95468400	Enhancers	Brain Hippocampus Middle	brain
37	chr1:95467600-95468600	Enhancers	Fetal Muscle Leg	muscle
38	chr1:95467600-95468800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr1:95467600-95468800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr1:95467600-95468800	Enhancers	Fetal Heart	heart
41	chr1:95467600-95469000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr1:95467600-95469000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:95467600-95469000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr1:95467600-95469000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr1:95467600-95469000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr1:95467600-95469000	Enhancers	Brain Anterior Caudate	brain
47	chr1:95467600-95469000	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr1:95467600-95469200	Enhancers	Ovary	ovary
49	chr1:95467600-95469200	Enhancers	Right Ventricle	heart
50	chr1:95467600-95469200	Enhancers	Stomach Smooth Muscle	stomach

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