Variant report

Variant	rs17100482
Chromosome Location	chr1:95431796-95431797
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95421951..95424595-chr1:95431431..95434214,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10747462	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs10874900	0.94[EUR][1000 genomes]
rs10874901	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs11165285	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs11165290	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs11165291	0.84[EUR][1000 genomes]
rs11165292	0.83[EUR][1000 genomes]
rs11165296	0.84[EUR][1000 genomes]
rs11165301	0.80[EUR][1000 genomes]
rs12022525	0.82[CEU][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12036045	0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12082888	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs12120694	0.80[EUR][1000 genomes]
rs12142814	0.88[CEU][hapmap]
rs12402604	0.86[EUR][1000 genomes]
rs12408845	0.88[CEU][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17112867	0.82[CEU][hapmap];0.91[JPT][hapmap];0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4427415	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs61772630	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7526765	0.83[CEU][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs7539517	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7540080	0.84[EUR][1000 genomes]
rs7551774	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95422000-95450800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:95428800-95432200	Weak transcription	Pancreas	Pancrea
3	chr1:95428800-95432600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:95428800-95436400	Weak transcription	Lung	lung
5	chr1:95428800-95439200	Weak transcription	Aorta	Aorta
6	chr1:95429000-95436200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:95429000-95436200	Weak transcription	HSMM	muscle
8	chr1:95429000-95436400	Weak transcription	Fetal Kidney	kidney
9	chr1:95429000-95436400	Weak transcription	HSMMtube	muscle
10	chr1:95429000-95437600	Weak transcription	Right Ventricle	heart
11	chr1:95429000-95439800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:95429200-95432400	Weak transcription	HUVEC	blood vessel
14	chr1:95429200-95436400	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:95429200-95440200	Weak transcription	Fetal Intestine Small	intestine
16	chr1:95429600-95437600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:95429800-95432400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:95429800-95436200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr1:95429800-95436400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:95429800-95436400	Weak transcription	Right Atrium	heart
21	chr1:95431400-95432000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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