Variant report

Variant	rs7551774
Chromosome Location	chr1:95446762-95446763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10747462	0.87[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10874900	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874901	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11165285	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11165290	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11165291	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11165292	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11165296	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11165301	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12022525	0.88[CEU][hapmap];0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12036045	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12060761	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12082888	0.88[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12120694	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12137144	0.82[CEU][hapmap]
rs12402604	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12408845	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17100482	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17112867	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4427415	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57001838	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61772630	0.82[AFR][1000 genomes]
rs7526765	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7539517	0.82[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7540080	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95422000-95450800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:95436600-95451200	Weak transcription	Small Intestine	intestine
4	chr1:95436800-95448600	Weak transcription	Brain Angular Gyrus	brain
5	chr1:95437600-95455600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:95437800-95455000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:95437800-95458400	Weak transcription	Liver	Liver
8	chr1:95439600-95448600	Weak transcription	Right Ventricle	heart
9	chr1:95440200-95450600	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:95440400-95447800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:95440800-95447200	Weak transcription	Adipose Nuclei	Adipose
12	chr1:95440800-95448800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:95444000-95446800	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:95445000-95447600	Enhancers	Primary hematopoietic stem cells	blood
15	chr1:95445000-95448600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:95445200-95446800	Enhancers	Fetal Heart	heart
17	chr1:95445200-95447000	Enhancers	HSMMtube	muscle
18	chr1:95445200-95447000	Enhancers	Osteobl	bone
19	chr1:95445200-95447800	Enhancers	Placenta Amnion	Placenta Amnion
20	chr1:95445200-95449200	Enhancers	Fetal Muscle Leg	muscle
21	chr1:95445200-95450000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr1:95445400-95446800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:95445400-95446800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr1:95445400-95446800	Enhancers	Left Ventricle	heart
25	chr1:95445400-95447000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:95445400-95447000	Enhancers	Right Atrium	heart
27	chr1:95445400-95447600	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr1:95445400-95448600	Enhancers	HSMM	muscle
29	chr1:95445400-95449000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr1:95445400-95449400	Enhancers	HUVEC	blood vessel
31	chr1:95445600-95446800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:95445600-95446800	Enhancers	NHLF	lung
33	chr1:95445600-95447000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:95445600-95447000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr1:95445600-95447200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:95445600-95447600	Enhancers	HepG2	liver
37	chr1:95445800-95446800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:95445800-95446800	Enhancers	HMEC	breast
39	chr1:95445800-95447000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:95445800-95447000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:95445800-95447000	Enhancers	Duodenum Mucosa	Duodenum
42	chr1:95445800-95447000	Enhancers	Fetal Intestine Large	intestine
43	chr1:95445800-95447000	Enhancers	NHDF-Ad	bronchial
44	chr1:95445800-95447600	Enhancers	Fetal Stomach	stomach
45	chr1:95445800-95448200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:95446000-95447000	Enhancers	Fetal Intestine Small	intestine
47	chr1:95446000-95448200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr1:95446000-95448600	Enhancers	NH-A	brain
49	chr1:95446200-95446800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:95446200-95447000	Enhancers	Rectal Smooth Muscle	rectum

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