Variant report

Variant	rs57001838
Chromosome Location	chr1:95561474-95561475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95548534..95550560-chr1:95561242..95563243,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10747462	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10874900	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10874901	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11165285	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11165290	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11165291	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11165292	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11165296	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11165301	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12022525	0.85[EUR][1000 genomes]
rs12036045	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12060761	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12082888	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12120694	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12402604	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12408845	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17112867	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4427415	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4565770	0.87[EUR][1000 genomes]
rs7526765	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7539517	0.82[EUR][1000 genomes]
rs7540080	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7551774	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95554200-95564000	Weak transcription	Osteobl	bone
2	chr1:95558400-95562400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr1:95559200-95561600	Weak transcription	A549	lung
4	chr1:95560400-95562600	Enhancers	HepG2	liver
5	chr1:95561000-95562400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:95561000-95563600	Enhancers	K562	blood
7	chr1:95561000-95564400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:95561000-95565000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr1:95561200-95561600	Enhancers	Liver	Liver
10	chr1:95561200-95564200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr1:95561200-95564400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:95561400-95562000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:95561400-95562200	Enhancers	Adipose Nuclei	Adipose
14	chr1:95561400-95562200	Flanking Active TSS	GM12878-XiMat	blood
15	chr1:95561400-95562400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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