Variant report

Variant	rs4580011
Chromosome Location	chr13:30306687-30306688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30290596..30292744-chr13:30306487..30308229,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs12854608	0.88[ASN][1000 genomes]
rs12867537	1.00[JPT][hapmap]
rs12868298	1.00[JPT][hapmap]
rs12869833	1.00[JPT][hapmap]
rs12875231	1.00[JPT][hapmap]
rs12877107	1.00[JPT][hapmap]
rs1327643	1.00[JPT][hapmap]
rs1571255	0.81[ASN][1000 genomes]
rs1631987	1.00[JPT][hapmap]
rs166760	1.00[JPT][hapmap]
rs17073905	1.00[JPT][hapmap]
rs1747057	1.00[JPT][hapmap]
rs1747060	1.00[JPT][hapmap]
rs1747062	1.00[JPT][hapmap]
rs17502383	0.88[EUR][1000 genomes]
rs17502757	1.00[JPT][hapmap]
rs2031280	1.00[JPT][hapmap]
rs2182778	0.94[ASN][1000 genomes]
rs278031	1.00[JPT][hapmap]
rs278032	1.00[JPT][hapmap]
rs278033	1.00[JPT][hapmap]
rs278035	1.00[JPT][hapmap]
rs278036	1.00[JPT][hapmap]
rs278039	1.00[JPT][hapmap]
rs2794297	1.00[JPT][hapmap]
rs2794299	1.00[JPT][hapmap]
rs2794300	1.00[JPT][hapmap]
rs3118078	1.00[JPT][hapmap]
rs34730463	0.94[ASN][1000 genomes]
rs4083609	1.00[JPT][hapmap]
rs4142339	1.00[JPT][hapmap]
rs4379924	0.81[ASN][1000 genomes]
rs4385989	1.00[JPT][hapmap]
rs4399408	1.00[JPT][hapmap]
rs4611301	1.00[JPT][hapmap]
rs4769773	1.00[JPT][hapmap]
rs59768871	1.00[ASN][1000 genomes]
rs61424636	0.94[ASN][1000 genomes]
rs719199	1.00[JPT][hapmap]
rs7322158	0.81[ASN][1000 genomes]
rs73444211	1.00[ASN][1000 genomes]
rs73444214	1.00[ASN][1000 genomes]
rs74042382	0.94[ASN][1000 genomes]
rs74042383	0.94[ASN][1000 genomes]
rs74042387	0.94[ASN][1000 genomes]
rs74042388	0.94[ASN][1000 genomes]
rs74042389	0.94[ASN][1000 genomes]
rs74042390	0.94[ASN][1000 genomes]
rs74042392	0.94[ASN][1000 genomes]
rs74042393	0.94[ASN][1000 genomes]
rs7985986	1.00[JPT][hapmap]
rs7992684	1.00[JPT][hapmap]
rs8000607	1.00[JPT][hapmap]
rs8001320	1.00[JPT][hapmap]
rs8001330	1.00[JPT][hapmap]
rs912394	0.81[ASN][1000 genomes]
rs9314977	1.00[JPT][hapmap]
rs9551729	0.94[ASN][1000 genomes]
rs9551734	0.81[ASN][1000 genomes]
rs9579469	0.88[ASN][1000 genomes]
rs9579472	0.88[ASN][1000 genomes]
rs9788356	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30305400-30307400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:30305800-30310600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:30306200-30307800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:30306200-30307800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:30306400-30307200	Enhancers	Primary hematopoietic stem cells	blood
6	chr13:30306400-30307600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:30306600-30306800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr13:30306600-30307800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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