Variant report

Variant	rs912394
Chromosome Location	chr13:30315404-30315405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30315360..30315868-chr9:133487249..133488200,2	MCF-7	breast:

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1099277	0.87[ASN][1000 genomes]
rs12861019	0.87[ASN][1000 genomes]
rs12864739	0.87[ASN][1000 genomes]
rs12865525	0.87[ASN][1000 genomes]
rs12867537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12868298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12869833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12872768	0.87[ASN][1000 genomes]
rs12874615	0.87[ASN][1000 genomes]
rs12875231	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs12877107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1327643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1571255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1631987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs166760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17073897	1.00[CHB][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs17073905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17073919	0.87[ASN][1000 genomes]
rs1747057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs1747058	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1747059	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1747060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs1747061	0.87[ASN][1000 genomes]
rs1747062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs1747063	0.87[ASN][1000 genomes]
rs17502757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1772726	0.87[ASN][1000 genomes]
rs2009535	0.94[ASN][1000 genomes]
rs2031280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs2182775	0.94[ASN][1000 genomes]
rs2182776	0.94[ASN][1000 genomes]
rs2182777	0.94[ASN][1000 genomes]
rs2182778	0.89[EUR][1000 genomes]
rs2256122	0.87[ASN][1000 genomes]
rs2476650	0.87[ASN][1000 genomes]
rs2476651	0.87[ASN][1000 genomes]
rs2761929	0.87[ASN][1000 genomes]
rs2761930	0.87[ASN][1000 genomes]
rs2761931	0.87[ASN][1000 genomes]
rs2761932	0.87[ASN][1000 genomes]
rs2761934	0.87[ASN][1000 genomes]
rs2761936	0.87[ASN][1000 genomes]
rs278031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs278032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs278033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs278035	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs278036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs278039	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs278043	0.87[ASN][1000 genomes]
rs278047	0.87[ASN][1000 genomes]
rs2794295	0.87[ASN][1000 genomes]
rs2794296	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2794297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2794299	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2794300	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3118078	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3118080	0.87[ASN][1000 genomes]
rs34232669	0.87[ASN][1000 genomes]
rs34333613	0.81[ASN][1000 genomes]
rs35693706	0.87[ASN][1000 genomes]
rs35828457	0.87[ASN][1000 genomes]
rs36082926	0.87[ASN][1000 genomes]
rs4083609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4142339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4142340	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4379924	1.00[ASN][1000 genomes]
rs4385989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs4399408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4580011	0.81[ASN][1000 genomes]
rs4611301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4769021	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4769023	0.94[ASN][1000 genomes]
rs4769024	0.87[ASN][1000 genomes]
rs4769773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57634252	0.87[ASN][1000 genomes]
rs58961964	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59768871	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs598281	1.00[TSI][hapmap]
rs6490427	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6490428	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6490431	0.87[ASN][1000 genomes]
rs71427282	0.87[ASN][1000 genomes]
rs71427283	0.87[ASN][1000 genomes]
rs71434758	0.87[ASN][1000 genomes]
rs719199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs7322158	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73444211	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73444214	0.81[ASN][1000 genomes]
rs74042393	0.89[EUR][1000 genomes]
rs74044752	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7983788	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7985986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7992684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8000607	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8001320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8001330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs818764	0.87[ASN][1000 genomes]
rs9314977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs943561	0.94[ASN][1000 genomes]
rs9508549	0.94[ASN][1000 genomes]
rs9508551	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9550492	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9551734	1.00[ASN][1000 genomes]
rs968612	0.87[ASN][1000 genomes]
rs9788356	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30310000-30317400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30310200-30317200	Weak transcription	GM12878-XiMat	blood
3	chr13:30315200-30315800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:30315200-30316000	Enhancers	Stomach Smooth Muscle	stomach
5	chr13:30315400-30316000	Enhancers	Adipose Nuclei	Adipose
6	chr13:30315400-30316400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr13:30315400-30317200	Weak transcription	Rectal Smooth Muscle	rectum

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