The 2.0 version of rSNPBase

Variant report

Variant rs6490431
Chromosome Location chr13:30414607-30414608
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:30376600-30420600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
2 chr13:30392000-30415600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr13:30404400-30420000 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr13:30404600-30415800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr13:30404800-30415600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr13:30404800-30418200 Weak transcription HSMM muscle
7 chr13:30405200-30415800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr13:30405400-30419200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr13:30405600-30414800 Weak transcription iPS-15b Cell Line embryonic stem cell
10 chr13:30406000-30415000 Weak transcription NHEK skin
11 chr13:30406000-30419600 Weak transcription Monocytes-CD14+_RO01746 blood
12 chr13:30406200-30417800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr13:30407200-30415800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr13:30407400-30415800 Weak transcription Gastric stomach
15 chr13:30407400-30419200 Weak transcription Fetal Intestine Small intestine
16 chr13:30407400-30419400 Weak transcription Brain Angular Gyrus brain
17 chr13:30407400-30419800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr13:30407400-30419800 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr13:30407400-30420800 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr13:30407600-30415800 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr13:30407600-30418400 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr13:30407800-30418600 Weak transcription Brain Substantia Nigra brain
23 chr13:30408200-30415800 Weak transcription Pancreas Pancrea
24 chr13:30408200-30420800 Weak transcription Right Atrium heart
25 chr13:30408400-30415800 Weak transcription Aorta Aorta
26 chr13:30408400-30415800 Weak transcription Placenta Amnion Placenta Amnion
27 chr13:30409800-30421600 Weak transcription Left Ventricle heart
28 chr13:30410000-30415800 Weak transcription H1 Cell Line embryonic stem cell
29 chr13:30410000-30420000 Enhancers Primary T helper cells PMA-I stimulated --
30 chr13:30410200-30415600 Weak transcription GM12878-XiMat blood
31 chr13:30410800-30415800 Weak transcription Primary B cells from peripheral blood blood
32 chr13:30411000-30414800 Weak transcription Brain Hippocampus Middle brain
33 chr13:30411000-30415800 Weak transcription Thymus Thymus
34 chr13:30411000-30420800 Weak transcription Ovary ovary
35 chr13:30411200-30414800 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr13:30411200-30415800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr13:30411200-30415800 Weak transcription Brain Cingulate Gyrus brain
38 chr13:30411200-30418200 Weak transcription Osteobl bone
39 chr13:30411200-30418600 Weak transcription Adipose Nuclei Adipose
40 chr13:30411400-30414800 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr13:30411800-30415800 Weak transcription Stomach Mucosa stomach
42 chr13:30412000-30416000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr13:30412000-30416000 Weak transcription Psoas Muscle Psoas
44 chr13:30412000-30421000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
45 chr13:30412400-30415000 Enhancers HUES48 Cell Line embryonic stem cell
46 chr13:30412600-30416200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr13:30413200-30414800 Enhancers Liver Liver
48 chr13:30413200-30415600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr13:30413200-30420600 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr13:30413400-30415600 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015