The 2.0 version of rSNPBase

Variant report

Variant rs4142340
Chromosome Location chr13:30360696-30360697
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:30333200-30368200 Weak transcription Aorta Aorta
2 chr13:30333600-30376200 Weak transcription Primary hematopoietic stem cells blood
3 chr13:30337600-30363000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr13:30339000-30364200 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr13:30341200-30373200 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr13:30341800-30363600 Weak transcription HSMM muscle
7 chr13:30341800-30365000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr13:30347600-30361800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr13:30347800-30361400 Weak transcription A549 lung
10 chr13:30349800-30364400 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr13:30350200-30361800 Weak transcription Fetal Lung lung
12 chr13:30350400-30361800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr13:30353400-30361600 Weak transcription Brain Hippocampus Middle brain
14 chr13:30354200-30361800 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr13:30355400-30362000 Weak transcription Rectal Smooth Muscle rectum
16 chr13:30357200-30363000 Weak transcription Ovary ovary
17 chr13:30357600-30364600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr13:30359000-30365600 Weak transcription Brain Inferior Temporal Lobe brain
19 chr13:30359000-30367200 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr13:30359800-30360800 Enhancers Fetal Intestine Small intestine
21 chr13:30359800-30361000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr13:30359800-30361400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr13:30359800-30361400 Enhancers Muscle Satellite Cultured Cells --
24 chr13:30359800-30362000 Enhancers Duodenum Mucosa Duodenum
25 chr13:30359800-30362600 Enhancers Liver Liver
26 chr13:30360000-30360800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
27 chr13:30360000-30360800 Enhancers Rectal Mucosa Donor 31 rectum
28 chr13:30360000-30362400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr13:30360200-30360800 Enhancers Brain Angular Gyrus brain
30 chr13:30360200-30360800 Enhancers NHDF-Ad bronchial
31 chr13:30360200-30361000 Enhancers Breast Myoepithelial Primary Cells Breast
32 chr13:30360200-30362800 Enhancers Osteobl bone
33 chr13:30360400-30360800 Enhancers Primary T helper cells PMA-I stimulated --
34 chr13:30360400-30362200 Enhancers Primary T helper cells fromperipheralblood blood
35 chr13:30360400-30362400 Weak transcription Stomach Mucosa stomach
36 chr13:30360400-30362600 Enhancers Brain Substantia Nigra brain
37 chr13:30360400-30363000 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr13:30360400-30368000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr13:30360600-30361200 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr13:30360600-30361600 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr13:30360600-30361800 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr13:30360600-30362000 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr13:30360600-30362000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr13:30360600-30362000 Weak transcription Brain Cingulate Gyrus brain
45 chr13:30360600-30362000 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr13:30360600-30362000 Weak transcription Small Intestine intestine
47 chr13:30360600-30362600 Weak transcription Gastric stomach
48 chr13:30360600-30363000 Weak transcription Left Ventricle heart
49 chr13:30360600-30363000 Weak transcription Pancreas Pancrea
50 chr13:30360600-30363200 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015