Variant report

Variant	rs4583001
Chromosome Location	chr11:50529713-50529714
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 240 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10794252	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10794253	0.85[AMR][1000 genomes]
rs10794262	0.85[AMR][1000 genomes]
rs10794264	0.82[AMR][1000 genomes]
rs10901972	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10901973	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10901975	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10901976	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10901977	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10901978	0.85[AMR][1000 genomes]
rs10901982	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10901991	0.81[AMR][1000 genomes]
rs10902002	0.82[AMR][1000 genomes]
rs11245715	0.82[AMR][1000 genomes]
rs11245720	0.82[AMR][1000 genomes]
rs11245745	0.85[AMR][1000 genomes]
rs11245747	0.85[AMR][1000 genomes]
rs11245748	0.85[AMR][1000 genomes]
rs11245759	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11245764	0.85[AMR][1000 genomes]
rs11245770	0.82[AMR][1000 genomes]
rs11245774	0.81[AMR][1000 genomes]
rs11245775	0.82[AMR][1000 genomes]
rs12275965	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12285388	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1581444	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1582376	0.82[AMR][1000 genomes]
rs1582378	0.82[AMR][1000 genomes]
rs1589622	0.82[AMR][1000 genomes]
rs1589630	0.81[AMR][1000 genomes]
rs1592578	0.83[AMR][1000 genomes]
rs1592587	0.85[AMR][1000 genomes]
rs1592593	0.82[AMR][1000 genomes]
rs1592594	0.82[AMR][1000 genomes]
rs1592598	0.82[AMR][1000 genomes]
rs1602132	0.84[AMR][1000 genomes]
rs1608265	0.84[AMR][1000 genomes]
rs1816010	0.85[AMR][1000 genomes]
rs1833265	0.81[AMR][1000 genomes]
rs1894995	0.85[AMR][1000 genomes]
rs1894996	0.81[AMR][1000 genomes]
rs1894998	0.85[AMR][1000 genomes]
rs1916212	0.86[AMR][1000 genomes]
rs2098430	0.81[AMR][1000 genomes]
rs2111314	0.82[AMR][1000 genomes]
rs2160612	0.85[AMR][1000 genomes]
rs2171791	0.82[AMR][1000 genomes]
rs2313662	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4284416	0.81[AMR][1000 genomes]
rs4290263	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4318010	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4385928	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4396319	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4439546	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4462381	0.81[AMR][1000 genomes]
rs4483619	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4492852	0.83[AMR][1000 genomes]
rs4503575	0.82[AMR][1000 genomes]
rs4514452	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4514454	0.82[AMR][1000 genomes]
rs4528364	0.82[AMR][1000 genomes]
rs4547128	0.82[AMR][1000 genomes]
rs4548652	0.82[AMR][1000 genomes]
rs4551803	0.84[AMR][1000 genomes]
rs4572161	0.85[AMR][1000 genomes]
rs4609636	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4980451	0.85[AMR][1000 genomes]
rs4980464	0.85[AMR][1000 genomes]
rs4980470	0.85[AMR][1000 genomes]
rs691001	0.81[AMR][1000 genomes]
rs7294007	0.85[AMR][1000 genomes]
rs7294227	0.81[AMR][1000 genomes]
rs8175682	0.82[AMR][1000 genomes]
rs8186106	0.82[AMR][1000 genomes]
rs8186123	0.81[AMR][1000 genomes]
rs8186177	0.84[AMR][1000 genomes]
rs8186182	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8186305	0.82[AMR][1000 genomes]
rs8186310	0.82[AMR][1000 genomes]
rs8186332	0.81[AMR][1000 genomes]
rs8186376	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8186394	0.82[AMR][1000 genomes]
rs8186410	0.82[AMR][1000 genomes]
rs8186442	0.82[AMR][1000 genomes]
rs8186553	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8186574	0.82[AMR][1000 genomes]
rs8189109	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9794922	0.82[AMR][1000 genomes]
rs9795328	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:151 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051021	chr11:49692184-50658777	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1036701	chr11:49846590-50769305	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv554395	chr11:50008258-50642550	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1047235	chr11:50012174-50769305	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1051699	chr11:50013671-50769305	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1037403	chr11:50019556-50751358	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1044792	chr11:50019556-50769305	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv467877	chr11:50057854-50642550	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv554396	chr11:50057854-50642550	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv3693389	chr11:50058095-50713402	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv1035641	chr11:50121285-50573214	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv1041731	chr11:50121285-50590065	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1053769	chr11:50121285-50613401	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1042046	chr11:50121285-50637245	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv1051675	chr11:50121285-50637245	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv554397	chr11:50121285-50642550	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv554402	chr11:50121285-50642550	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv897506	chr11:50121285-50642550	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
19	nsv1047502	chr11:50121285-50651567	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv1051055	chr11:50121285-50658777	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
21	nsv554400	chr11:50121285-50736106	Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv554398	chr11:50121285-50738763	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
23	nsv554399	chr11:50121285-50766308	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv554401	chr11:50121285-50766308	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv1035727	chr11:50121285-50769305	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
26	nsv1036371	chr11:50121285-50769305	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv1042993	chr11:50121285-50769305	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv1045083	chr11:50121285-50769305	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
29	nsv1051800	chr11:50121285-50769305	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
30	nsv1051873	chr11:50121285-50769305	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv897507	chr11:50121285-51093950	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
32	nsv1040407	chr11:50121285-51095992	Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
33	nsv554403	chr11:50164027-50766308	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
34	esv2760206	chr11:50203494-51096372	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
35	nsv430385	chr11:50218185-50702639	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
36	nsv554405	chr11:50238212-50642550	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
37	nsv897513	chr11:50245252-51093950	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
38	nsv554406	chr11:50249873-50766308	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
39	nsv1048846	chr11:50281305-50769305	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
40	nsv897516	chr11:50297005-50642550	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
41	nsv897517	chr11:50297005-50697447	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
42	nsv1052258	chr11:50297005-50769305	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
43	nsv897518	chr11:50297005-51093950	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
44	nsv1041304	chr11:50299098-50769305	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
45	nsv1048803	chr11:50299098-51238712	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
46	nsv897522	chr11:50304124-50697447	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
47	nsv897523	chr11:50304124-51093950	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
48	nsv554408	chr11:50319958-50642867	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
49	nsv897526	chr11:50320057-50713402	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
50	nsv897529	chr11:50325741-50642550	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:50527600-50547400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:50529400-50537400	ZNF genes & repeats	Liver	Liver
3	chr11:50529600-50532200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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