Variant report

Variant	rs4980451
Chromosome Location	chrX:58435655-58435656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10794252	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10794253	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10794256	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10794262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10794264	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10901972	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10901973	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10901975	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10901976	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10901977	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10901978	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10901982	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10901991	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10901995	0.82[ASN][1000 genomes]
rs10901998	0.92[ASN][1000 genomes]
rs10902000	0.95[ASN][1000 genomes]
rs10902001	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10902002	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10902009	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1118133	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1118135	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11245745	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11245747	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11245748	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11245759	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11245764	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11245767	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11245770	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11245771	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11245772	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11245774	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11245775	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11245777	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11245784	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11494436	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11561065	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12275965	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12285388	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1581444	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1582376	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1582378	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1592576	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1592578	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1592582	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1592583	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1592584	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1592585	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1592587	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1592590	0.92[ASN][1000 genomes]
rs1592593	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1592594	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1592598	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1592600	0.84[ASN][1000 genomes]
rs1816010	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1819877	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1833265	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1894995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894996	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1894998	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1916212	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2098430	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2111314	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2160606	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2160611	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2160612	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2193324	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2216281	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2313662	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2872480	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4274195	0.87[ASN][1000 genomes]
rs4284416	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4290263	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4318010	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4385928	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4388915	0.88[ASN][1000 genomes]
rs4396319	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4439546	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4462381	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4483619	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4492852	0.82[AMR][1000 genomes]
rs4503575	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4514452	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4514454	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4528364	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4547128	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4548652	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4551803	0.82[AMR][1000 genomes]
rs4572161	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4583001	0.85[AMR][1000 genomes]
rs4609636	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4980464	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4980466	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4980467	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4980470	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4980493	0.88[ASN][1000 genomes]
rs4980495	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs71479481	0.93[ASN][1000 genomes]
rs7294007	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7294180	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7294183	0.95[ASN][1000 genomes]
rs7294227	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8175638	0.93[ASN][1000 genomes]
rs8175669	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8175681	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8175682	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8186106	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8186123	0.91[ASN][1000 genomes]
rs8186140	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8186156	0.85[AMR][1000 genomes]
rs8186182	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8186187	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8186198	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8186273	0.91[ASN][1000 genomes]
rs8186305	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8186310	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8186332	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8186338	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8186376	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8186394	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8186401	0.93[ASN][1000 genomes]
rs8186410	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8186442	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8186553	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8186574	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8188909	0.91[ASN][1000 genomes]
rs8189109	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9794922	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9795328	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930980	chrX:57672946-58544094	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv993422	chrX:57844012-58544094	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv915796	chrX:57926505-58544094	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv931956	chrX:57956403-58544094	Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv2830078	chrX:58248880-58564037	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv482283	chrX:58356054-58564667	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:58430200-58437200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chrX:58435600-58441600	ZNF genes & repeats	Liver	Liver

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