Variant report

Variant	rs4614371
Chromosome Location	chr10:98108958-98108959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10736100	1.00[AMR][1000 genomes]
rs10736105	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10786275	1.00[AMR][1000 genomes]
rs1902703	1.00[AMR][1000 genomes]
rs1923690	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2861309	1.00[AMR][1000 genomes]
rs4918999	1.00[AMR][1000 genomes]
rs6584066	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7081385	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7895009	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs941992	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98105000-98113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:98106200-98109000	Weak transcription	Thymus	Thymus
3	chr10:98106200-98112600	Weak transcription	Brain Anterior Caudate	brain
4	chr10:98106200-98113000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
6	chr10:98106400-98109200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:98106600-98112400	Weak transcription	Brain Substantia Nigra	brain
8	chr10:98106600-98112400	Weak transcription	Dnd41	blood
9	chr10:98107400-98110800	Weak transcription	Brain Angular Gyrus	brain
10	chr10:98108800-98109600	Genic enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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