Variant report

Variant	rs6584066
Chromosome Location	chr10:98078239-98078240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10736100	1.00[AMR][1000 genomes]
rs10736105	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10786275	1.00[AMR][1000 genomes]
rs1902703	1.00[AMR][1000 genomes]
rs1923690	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2861309	1.00[AMR][1000 genomes]
rs2861310	1.00[YRI][hapmap]
rs4614371	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4918999	1.00[AMR][1000 genomes]
rs7073904	1.00[LWK][hapmap]
rs7081385	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7895009	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs941992	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98070400-98079800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:98071000-98079600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:98071000-98080000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:98071400-98079600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:98072000-98081800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:98072400-98079800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:98075400-98088800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:98076000-98079600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:98076200-98079600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:98076400-98079600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:98077800-98089600	Strong transcription	Dnd41	blood
12	chr10:98077800-98091800	Strong transcription	Thymus	Thymus
13	chr10:98078000-98079600	Strong transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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