Variant report

Variant	rs4620334
Chromosome Location	chr9:9221800-9221801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10739186	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10816093	0.82[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap]
rs4132505	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs4237173	0.85[CHB][hapmap]
rs4237174	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4344133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4457389	0.81[JPT][hapmap]
rs4742576	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs5001110	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6477375	0.82[JPT][hapmap]
rs6477376	0.90[ASN][1000 genomes]
rs7018892	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs7031995	0.81[JPT][hapmap]
rs7032620	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap]
rs7035832	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs7041871	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7859634	0.81[JPT][hapmap]
rs7863177	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2761491	chr9:9139951-9222892	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv613303	chr9:9187539-9225463	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv1027042	chr9:9208635-9300048	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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