Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10739186	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs10816093	0.82[CHB][hapmap]
rs4132505	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4237173	0.82[CHB][hapmap]
rs4237174	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4344133	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4457389	0.82[JPT][hapmap]
rs4620334	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4742576	0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap]
rs4742579	0.89[YRI][hapmap]
rs6477375	0.82[JPT][hapmap]
rs6477376	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6477377	0.93[YRI][hapmap];0.81[ASN][1000 genomes]
rs6477378	0.81[ASN][1000 genomes]
rs7018892	0.89[YRI][hapmap];0.86[ASN][1000 genomes]
rs7031995	0.82[JPT][hapmap]
rs7032620	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap]
rs7035832	0.82[JPT][hapmap]
rs7041871	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs7043023	0.89[YRI][hapmap]
rs7859634	0.82[JPT][hapmap]
rs7863177	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613303	chr9:9187539-9225463	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv1027042	chr9:9208635-9300048	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5001110	RPRM	cis	Cerebellum	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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