Variant report

Variant	rs7863177
Chromosome Location	chr9:9263980-9263981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10739186	0.86[JPT][hapmap]
rs10816081	0.95[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10816093	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs1157904	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs12551223	0.82[CHD][hapmap]
rs1333106	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs1547288	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs16929122	0.86[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1981049	0.83[CHB][hapmap];0.86[CHD][hapmap]
rs2802280	0.91[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs4097905	0.91[CHB][hapmap];0.91[CHD][hapmap]
rs4132505	0.81[JPT][hapmap]
rs4272446	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs4329321	0.91[CHB][hapmap];0.93[CHD][hapmap]
rs4344133	0.80[JPT][hapmap]
rs4361814	0.86[JPT][hapmap]
rs4363255	0.81[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap]
rs4457389	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs4560852	0.91[CHB][hapmap]
rs4563945	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs4620334	0.81[JPT][hapmap]
rs4742581	0.91[CHB][hapmap]
rs4742583	0.91[CHB][hapmap]
rs5001110	0.81[JPT][hapmap]
rs7032620	0.81[JPT][hapmap]
rs7042931	0.95[CHB][hapmap]
rs7859634	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap]
rs7860238	0.91[CHB][hapmap]
rs9299091	0.90[JPT][hapmap]
rs9299092	0.91[CHB][hapmap]
rs9408753	0.87[CHB][hapmap]
rs953632	0.87[CHB][hapmap];0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1027042	chr9:9208635-9300048	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv1021440	chr9:9231961-9329870	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv892253	chr9:9249912-9287321	Enhancers	n/a	n/a	inside rSNPs	n/a
8	nsv1030899	chr9:9250314-9291197	Enhancers	n/a	n/a	inside rSNPs	n/a
9	nsv892254	chr9:9253587-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv613304	chr9:9263980-9295281	Enhancers	n/a	n/a	inside rSNPs	n/a
12	nsv613305	chr9:9263980-9310461	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links