Variant report

Variant	rs4621456
Chromosome Location	chr4:76981344-76981345
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76981233..76983352-chr4:76986434..76988811,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10019066	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025961	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10030471	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10222911	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10433952	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10856871	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs12499668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12509988	1.00[CEU][hapmap]
rs12509996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12510239	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511352	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12511357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511861	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13106039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554015	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17001275	0.83[CEU][hapmap]
rs17001284	0.83[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs28484974	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28601861	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28647509	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869461	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs35353995	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733236	0.82[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs4404571	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55813915	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054611	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60282049	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60431104	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67194908	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67308118	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67413521	0.80[AFR][1000 genomes]
rs67687266	0.84[ASN][1000 genomes]
rs6834291	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs6857378	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666094	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670156	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7671170	0.84[ASN][1000 genomes]
rs7671209	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7676234	0.84[ASN][1000 genomes]
rs7679689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7684879	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7685390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693117	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693456	1.00[CEU][hapmap]
rs7693606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7693693	0.97[ASN][1000 genomes]
rs7696286	0.83[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs9990658	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76977400-76981600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr4:76978000-76982800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:76979400-76981400	Enhancers	HepG2	liver
4	chr4:76979400-76982200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:76979800-76982400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:76980000-76983200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:76980200-76981600	Enhancers	Liver	Liver
8	chr4:76980600-76981800	Enhancers	Stomach Mucosa	stomach
9	chr4:76980600-76984200	Enhancers	Primary B cells from cord blood	blood
10	chr4:76980800-76981400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:76980800-76982000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr4:76980800-76982800	Enhancers	Hela-S3	cervix
13	chr4:76981000-76981400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:76981000-76982000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:76981000-76982800	Enhancers	NHEK	skin
16	chr4:76981200-76982000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:76981200-76983000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links