Variant report

Variant	rs4404571
Chromosome Location	chr4:76969498-76969499
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10019066	0.90[ASN][1000 genomes]
rs10025961	0.90[ASN][1000 genomes]
rs10030471	0.90[ASN][1000 genomes]
rs10433952	0.90[ASN][1000 genomes]
rs12499668	0.90[ASN][1000 genomes]
rs12510239	0.90[ASN][1000 genomes]
rs12511357	0.90[ASN][1000 genomes]
rs12511359	0.90[ASN][1000 genomes]
rs13106039	0.90[ASN][1000 genomes]
rs28484974	0.90[ASN][1000 genomes]
rs28601861	0.90[ASN][1000 genomes]
rs28647509	0.90[ASN][1000 genomes]
rs35353995	0.90[ASN][1000 genomes]
rs4621456	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55813915	0.90[ASN][1000 genomes]
rs55964684	0.85[AMR][1000 genomes]
rs56039229	0.85[AMR][1000 genomes]
rs56054611	0.90[ASN][1000 genomes]
rs60282049	0.90[ASN][1000 genomes]
rs60431104	0.90[ASN][1000 genomes]
rs6532167	0.90[ASN][1000 genomes]
rs6532168	0.90[ASN][1000 genomes]
rs6532169	0.90[ASN][1000 genomes]
rs6532170	0.90[ASN][1000 genomes]
rs67194908	0.90[ASN][1000 genomes]
rs67308118	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs67413521	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs67687266	0.84[AMR][1000 genomes]
rs6857358	0.82[AMR][1000 genomes]
rs6857378	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7666094	0.90[ASN][1000 genomes]
rs7671170	0.80[ASN][1000 genomes]
rs7671209	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7676234	0.80[ASN][1000 genomes]
rs7679689	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7684879	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7685390	0.90[ASN][1000 genomes]
rs7692605	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7693117	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7693693	0.87[ASN][1000 genomes]
rs9990658	0.90[ASN][1000 genomes]
rs9998233	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv19222	chr4:76948569-76977780	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1802071	chr4:76948817-76972594	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv594691	chr4:76961802-76972594	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1810835	chr4:76961802-76974351	Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv594692	chr4:76964188-76974351	Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv513139	chr4:76964249-76972315	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76958200-76972600	Weak transcription	Right Atrium	heart
2	chr4:76965000-76977400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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