Variant report

Variant	rs67413521
Chromosome Location	chr4:76955421-76955422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76911559..76914179-chr4:76954597..76956782,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198301	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10222911	0.85[ASN][1000 genomes]
rs1050176	0.88[ASN][1000 genomes]
rs10856871	0.85[ASN][1000 genomes]
rs11097192	0.85[ASN][1000 genomes]
rs12500200	0.88[ASN][1000 genomes]
rs12511861	0.85[ASN][1000 genomes]
rs1554015	0.85[ASN][1000 genomes]
rs17001275	0.85[ASN][1000 genomes]
rs1910907	0.85[ASN][1000 genomes]
rs2869461	0.88[ASN][1000 genomes]
rs28703679	0.85[ASN][1000 genomes]
rs35353995	0.84[AFR][1000 genomes]
rs3733236	0.88[ASN][1000 genomes]
rs4404571	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4621456	0.80[AFR][1000 genomes]
rs4859412	0.85[ASN][1000 genomes]
rs55964684	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56039229	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316945	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58909712	0.85[ASN][1000 genomes]
rs61279846	0.85[ASN][1000 genomes]
rs6532084	0.88[ASN][1000 genomes]
rs66477189	0.85[ASN][1000 genomes]
rs67210456	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67297326	0.85[ASN][1000 genomes]
rs67687266	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6828744	0.85[ASN][1000 genomes]
rs6834291	0.85[ASN][1000 genomes]
rs6847716	0.85[ASN][1000 genomes]
rs6857358	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6857378	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72651387	0.85[ASN][1000 genomes]
rs7349626	0.85[ASN][1000 genomes]
rs7670156	0.88[ASN][1000 genomes]
rs7671125	0.85[ASN][1000 genomes]
rs7671209	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7679689	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7684879	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7692605	0.83[AFR][1000 genomes]
rs7693117	0.83[AFR][1000 genomes]
rs7696286	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv19222	chr4:76948569-76977780	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1821339	chr4:76948817-76955927	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1802071	chr4:76948817-76972594	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv18263	chr4:76954997-76955641	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1815228	chr4:76955027-76959624	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76950200-76957000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:76950800-76956200	Weak transcription	Monocytes-CD14+_RO01746	blood

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