Variant report

Variant	rs6857358
Chromosome Location	chr4:76915247-76915248
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76912267..76914900-chr4:76914989..76917070,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10222911	0.97[ASN][1000 genomes]
rs1050176	1.00[ASN][1000 genomes]
rs10856871	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097192	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500200	1.00[ASN][1000 genomes]
rs12511861	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1554015	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17001275	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17001284	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1910907	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2869461	1.00[ASN][1000 genomes]
rs28703679	0.97[ASN][1000 genomes]
rs3733236	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4404571	0.82[AMR][1000 genomes]
rs4859412	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55964684	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56039229	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56105413	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56316945	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58909712	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59559903	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61279846	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532084	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66477189	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67210456	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67297326	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67413521	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67687266	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6828744	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6834291	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6847716	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6857378	0.82[AMR][1000 genomes]
rs72651379	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72651387	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7349626	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7670156	1.00[ASN][1000 genomes]
rs7671125	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7671209	0.81[AMR][1000 genomes]
rs7679689	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7684879	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7696286	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6857358	ASAHL	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76912400-76932200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:76914000-76918000	Weak transcription	Fetal Intestine Small	intestine

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