Variant report

Variant	rs67687266
Chromosome Location	chr4:76940636-76940637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10019066	0.84[ASN][1000 genomes]
rs10025961	0.84[ASN][1000 genomes]
rs10030471	0.84[ASN][1000 genomes]
rs10222911	0.88[ASN][1000 genomes]
rs10433952	0.84[ASN][1000 genomes]
rs1050176	0.91[ASN][1000 genomes]
rs10856871	0.88[ASN][1000 genomes]
rs11097192	0.88[ASN][1000 genomes]
rs12499668	0.84[ASN][1000 genomes]
rs12500200	0.91[ASN][1000 genomes]
rs12510239	0.84[ASN][1000 genomes]
rs12511357	0.84[ASN][1000 genomes]
rs12511359	0.84[ASN][1000 genomes]
rs12511861	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13106039	0.84[ASN][1000 genomes]
rs1554015	0.88[ASN][1000 genomes]
rs17001275	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17001284	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1910907	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28484974	0.84[ASN][1000 genomes]
rs28601861	0.84[ASN][1000 genomes]
rs28647509	0.84[ASN][1000 genomes]
rs2869461	0.91[ASN][1000 genomes]
rs28703679	0.88[ASN][1000 genomes]
rs35353995	0.84[ASN][1000 genomes]
rs3733236	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4404571	0.84[AMR][1000 genomes]
rs4621456	0.84[ASN][1000 genomes]
rs4859412	0.88[ASN][1000 genomes]
rs55813915	0.84[ASN][1000 genomes]
rs55964684	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56039229	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56054611	0.84[ASN][1000 genomes]
rs56105413	0.85[AMR][1000 genomes]
rs56316945	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58909712	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59559903	0.83[AMR][1000 genomes]
rs60282049	0.84[ASN][1000 genomes]
rs60431104	0.84[ASN][1000 genomes]
rs61279846	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6532084	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6532167	0.84[ASN][1000 genomes]
rs6532168	0.84[ASN][1000 genomes]
rs6532169	0.84[ASN][1000 genomes]
rs6532170	0.84[ASN][1000 genomes]
rs66477189	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67194908	0.84[ASN][1000 genomes]
rs67210456	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67297326	0.88[ASN][1000 genomes]
rs67308118	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs67413521	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6828744	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6834291	0.88[ASN][1000 genomes]
rs6847716	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6857358	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6857378	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72651379	0.83[AMR][1000 genomes]
rs72651387	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7349626	0.88[ASN][1000 genomes]
rs7666094	0.84[ASN][1000 genomes]
rs7670156	0.91[ASN][1000 genomes]
rs7671125	0.88[ASN][1000 genomes]
rs7671170	0.80[ASN][1000 genomes]
rs7671209	0.82[AMR][1000 genomes]
rs7676234	0.80[ASN][1000 genomes]
rs7679689	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7684879	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7685390	0.84[ASN][1000 genomes]
rs7692605	0.84[ASN][1000 genomes]
rs7693117	0.84[ASN][1000 genomes]
rs7693693	0.81[ASN][1000 genomes]
rs7696286	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9990658	0.84[ASN][1000 genomes]
rs9998233	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76934400-76944200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr4:76936400-76944000	Weak transcription	Fetal Intestine Large	intestine
3	chr4:76937200-76941000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr4:76937200-76943400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:76937600-76941400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:76939000-76944200	Weak transcription	Fetal Intestine Small	intestine

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