Variant report

Variant	rs462179
Chromosome Location	chr21:40002199-40002200
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs118331	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2073427	0.85[CEU][hapmap]
rs460049	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs462006	0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs462317	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs463226	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs464484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs467138	0.82[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39995200-40002400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:40000800-40002400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr21:40001000-40002600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr21:40001400-40003000	Weak transcription	Aorta	Aorta
5	chr21:40001800-40004000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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