Variant report

Variant	rs464484
Chromosome Location	chr21:40003117-40003118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs118331	0.81[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs2073427	0.89[GIH][hapmap];0.95[MEX][hapmap]
rs460049	0.84[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs462006	0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs462179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs462317	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs463226	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs467138	0.82[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40001800-40004000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr21:40002400-40003200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr21:40002400-40003200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr21:40002400-40003400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr21:40002400-40003800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr21:40002600-40003200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr21:40002600-40003400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr21:40002600-40003400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr21:40002800-40003200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr21:40002800-40003400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr21:40002800-40003400	Enhancers	HMEC	breast
12	chr21:40002800-40003600	Enhancers	Fetal Brain Male	brain
13	chr21:40002800-40003800	Bivalent Enhancer	HSMMtube	muscle
14	chr21:40003000-40003200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr21:40003000-40003800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
16	chr21:40003000-40003800	Enhancers	Aorta	Aorta
17	chr21:40003000-40003800	Enhancers	NH-A	brain
18	chr21:40003000-40003800	Flanking Active TSS	Osteobl	bone
19	chr21:40003000-40008600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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