Variant report

Variant	rs460049
Chromosome Location	chr21:39999216-39999217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs118331	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2073427	0.81[MEX][hapmap]
rs460439	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs462006	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs462179	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs462317	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs463166	0.83[ASN][1000 genomes]
rs463226	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs464484	0.84[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs467138	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39995200-40002400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:39996600-40000600	Weak transcription	Aorta	Aorta
3	chr21:39996600-40001800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr21:39997600-40000000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr21:39997800-39999400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr21:39999200-40000400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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