Variant report

Variant	rs462006
Chromosome Location	chr21:40000876-40000877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs118331	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2836546	0.86[CHB][hapmap]
rs460049	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs460439	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs462179	0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs462317	0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs463166	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs463226	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs463780	0.81[ASN][1000 genomes]
rs464484	0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs466939	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs467138	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39995200-40002400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:39996600-40001800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr21:40000000-40001000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr21:40000600-40001400	Enhancers	Aorta	Aorta
5	chr21:40000800-40002400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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