Variant report

Variant	rs466031
Chromosome Location	chr6:34315284-34315285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34309301..34312552-chr6:34312659..34315940,4	K562	blood:
2	chr6:34308267..34311502-chr6:34313780..34316538,3	K562	blood:
3	chr6:34314465..34317126-chr6:34317621..34320996,4	K562	blood:
4	chr6:34303886..34306765-chr6:34314497..34316952,3	K562	blood:
5	chr6:34305147..34308643-chr6:34314207..34316952,4	K562	blood:
6	chr6:34305355..34307280-chr6:34313931..34315752,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs172280	1.00[YRI][hapmap]
rs182280	1.00[YRI][hapmap]
rs1889733	1.00[YRI][hapmap]
rs206922	1.00[YRI][hapmap]
rs206928	1.00[YRI][hapmap]
rs206931	1.00[YRI][hapmap]
rs206932	1.00[YRI][hapmap]
rs206933	1.00[YRI][hapmap]
rs206938	1.00[YRI][hapmap]
rs206940	1.00[YRI][hapmap]
rs2395563	1.00[YRI][hapmap]
rs2840286	1.00[YRI][hapmap]
rs3846870	1.00[YRI][hapmap]
rs453919	1.00[YRI][hapmap]
rs460389	1.00[YRI][hapmap]
rs462194	1.00[YRI][hapmap]
rs4713778	1.00[YRI][hapmap]
rs6457780	1.00[YRI][hapmap]
rs6908420	1.00[YRI][hapmap]
rs7773372	1.00[YRI][hapmap]
rs9394233	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	esv1797588	chr6:34310476-34319041	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv602873	chr6:34315284-34318314	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv602874	chr6:34315284-34318540	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv602875	chr6:34315284-34318654	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv602876	chr6:34315284-34318837	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34261800-34330800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:34285200-34330600	Weak transcription	Thymus	Thymus
3	chr6:34285800-34326600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:34289000-34325200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:34298600-34326400	Weak transcription	A549	lung
6	chr6:34301600-34318000	Weak transcription	Fetal Brain Female	brain
7	chr6:34306000-34327800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:34306000-34328800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr6:34307000-34320000	Weak transcription	Ovary	ovary
10	chr6:34308800-34330800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:34309200-34315800	Weak transcription	Placenta	Placenta
12	chr6:34309200-34318200	Weak transcription	Fetal Lung	lung
13	chr6:34309400-34317200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:34309400-34317800	Weak transcription	Brain Germinal Matrix	brain
15	chr6:34309600-34317200	Weak transcription	NHDF-Ad	bronchial
16	chr6:34309600-34319800	Weak transcription	Small Intestine	intestine
17	chr6:34309600-34329200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:34309800-34316800	Weak transcription	Osteobl	bone
19	chr6:34309800-34317000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:34309800-34317000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:34309800-34317200	Weak transcription	HSMM	muscle
22	chr6:34309800-34318000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:34309800-34318000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:34309800-34318000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:34309800-34318000	Weak transcription	Fetal Intestine Small	intestine
26	chr6:34309800-34318600	Weak transcription	HMEC	breast
27	chr6:34309800-34320000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:34309800-34320000	Weak transcription	Pancreas	Pancrea
29	chr6:34309800-34320200	Weak transcription	HepG2	liver
30	chr6:34309800-34321400	Weak transcription	Lung	lung
31	chr6:34309800-34327000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:34309800-34329800	Weak transcription	Fetal Thymus	thymus
33	chr6:34309800-34330800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr6:34309800-34337600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:34309800-34347200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:34310000-34317000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:34310000-34318000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:34310000-34320200	Weak transcription	Fetal Stomach	stomach
39	chr6:34310000-34330600	Weak transcription	Dnd41	blood
40	chr6:34310200-34318000	Weak transcription	Liver	Liver
41	chr6:34310200-34318000	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:34310200-34318000	Weak transcription	NHLF	lung
43	chr6:34310200-34318200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:34310400-34318000	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:34310400-34320000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:34310400-34321600	Weak transcription	Right Ventricle	heart
47	chr6:34310400-34329200	Weak transcription	Brain Angular Gyrus	brain
48	chr6:34310600-34317200	Weak transcription	Fetal Heart	heart
49	chr6:34310600-34320000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:34310600-34326400	Weak transcription	Rectal Smooth Muscle	rectum

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