Variant report

Variant	rs206938
Chromosome Location	chr6:34331132-34331133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34330571..34332725-chr6:34351916..34353996,2	K562	blood:
2	chr6:34330812..34332730-chr6:34334733..34336361,2	K562	blood:
3	chr6:34204139..34206583-chr6:34330883..34333553,2	K562	blood:

Variant related genes	Relation type
ENSG00000137309	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10947509	1.00[AMR][1000 genomes]
rs12660150	1.00[AFR][1000 genomes]
rs172280	1.00[YRI][hapmap]
rs182280	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1889733	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206922	1.00[YRI][hapmap]
rs206928	1.00[YRI][hapmap]
rs206929	1.00[AMR][1000 genomes]
rs206931	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs206932	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs206933	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs206934	1.00[AMR][1000 genomes]
rs206939	1.00[AMR][1000 genomes]
rs206940	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2182382	1.00[AMR][1000 genomes]
rs2395557	1.00[AMR][1000 genomes]
rs2395558	1.00[AMR][1000 genomes]
rs2395563	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2395565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2395566	1.00[AMR][1000 genomes]
rs2840286	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2894399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3843524	1.00[AMR][1000 genomes]
rs3846865	1.00[AMR][1000 genomes]
rs3846870	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3857561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs443351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs453919	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs460389	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs462194	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs466031	1.00[YRI][hapmap]
rs4713778	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4713814	1.00[YRI][hapmap]
rs6457780	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6457782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6457783	1.00[AMR][1000 genomes]
rs6908420	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918865	1.00[AMR][1000 genomes]
rs6922059	1.00[AMR][1000 genomes]
rs7760590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773372	1.00[YRI][hapmap]
rs7774674	1.00[AMR][1000 genomes]
rs9296118	1.00[AMR][1000 genomes]
rs9394233	1.00[YRI][hapmap]
rs9461986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1034978	chr6:34327526-34362187	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34309800-34337600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:34309800-34347200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:34315400-34351200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:34316200-34333400	Weak transcription	Placenta	Placenta
5	chr6:34318200-34355800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:34320400-34333400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:34320400-34350400	Weak transcription	Esophagus	oesophagus
8	chr6:34322200-34333600	Weak transcription	Lung	lung
9	chr6:34326400-34331600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:34327000-34351600	Weak transcription	Ovary	ovary
11	chr6:34327600-34332400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:34327600-34342200	Weak transcription	Fetal Kidney	kidney
13	chr6:34327800-34356400	Weak transcription	Hela-S3	cervix
14	chr6:34328000-34337200	Weak transcription	Right Atrium	heart
15	chr6:34328000-34342000	Weak transcription	Fetal Brain Female	brain
16	chr6:34328000-34345400	Weak transcription	Fetal Stomach	stomach
17	chr6:34328000-34351200	Weak transcription	Gastric	stomach
18	chr6:34328400-34337800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:34328600-34358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:34328800-34333200	Weak transcription	HMEC	breast
21	chr6:34328800-34333800	Weak transcription	NH-A	brain
22	chr6:34328800-34337800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:34329000-34331600	Genic enhancers	K562	blood
24	chr6:34329000-34333400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:34329000-34333400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:34329000-34333400	Weak transcription	Right Ventricle	heart
27	chr6:34329000-34334400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:34329000-34337800	Weak transcription	NHEK	skin
29	chr6:34329200-34333400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:34329600-34331200	Enhancers	Psoas Muscle	Psoas
31	chr6:34329600-34332600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:34329600-34345800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:34329800-34331400	Enhancers	Fetal Muscle Leg	muscle
34	chr6:34329800-34346400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:34329800-34351200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:34330000-34331600	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:34330000-34337200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr6:34330200-34332400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:34330400-34331200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr6:34330400-34331400	Enhancers	Fetal Thymus	thymus
41	chr6:34330400-34331600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:34330600-34331200	Enhancers	H1 Cell Line	embryonic stem cell
43	chr6:34330600-34331200	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr6:34330600-34331200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr6:34330600-34331200	Enhancers	Brain Angular Gyrus	brain
46	chr6:34330600-34331200	Enhancers	Brain Substantia Nigra	brain
47	chr6:34330600-34331200	Enhancers	Thymus	Thymus
48	chr6:34330600-34331400	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr6:34330600-34331400	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr6:34330600-34331400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links