Variant report

Variant	rs7773372
Chromosome Location	chr6:34377416-34377417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34214488..34218598-chr6:34376198..34378970,4	K562	blood:
2	chr6:34247219..34249868-chr6:34377051..34378907,2	K562	blood:
3	chr6:34376410..34378113-chr6:34392082..34393924,2	MCF-7	breast:
4	chr6:34356693..34361584-chr6:34376924..34385699,12	K562	blood:

Variant related genes	Relation type
ENSG00000225339	Chromatin interaction
ENSG00000270800	Chromatin interaction
ENSG00000272325	Chromatin interaction
ENSG00000124614	Chromatin interaction
ENSG00000186577	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs172280	1.00[YRI][hapmap]
rs182280	1.00[YRI][hapmap]
rs1889733	1.00[YRI][hapmap]
rs205271	1.00[YRI][hapmap]
rs206922	1.00[YRI][hapmap]
rs206928	1.00[YRI][hapmap]
rs206931	1.00[YRI][hapmap]
rs206932	1.00[YRI][hapmap]
rs206933	1.00[YRI][hapmap]
rs206938	1.00[YRI][hapmap]
rs206940	1.00[YRI][hapmap]
rs2395563	1.00[YRI][hapmap]
rs2840286	1.00[YRI][hapmap]
rs3846870	1.00[YRI][hapmap]
rs453919	1.00[YRI][hapmap]
rs460389	1.00[YRI][hapmap]
rs462194	1.00[YRI][hapmap]
rs466031	1.00[YRI][hapmap]
rs4713778	1.00[YRI][hapmap]
rs4713814	1.00[YRI][hapmap]
rs6457780	1.00[YRI][hapmap]
rs6908420	1.00[YRI][hapmap]
rs9394233	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34361000-34384800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:34361200-34382400	Weak transcription	Pancreas	Pancrea
3	chr6:34361200-34384800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:34361400-34378600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:34361800-34382400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:34362200-34382000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:34367400-34379800	Weak transcription	HepG2	liver
8	chr6:34370000-34383400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:34371000-34378200	Weak transcription	A549	lung
10	chr6:34371200-34378400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:34371200-34383400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:34371400-34384000	Weak transcription	Right Ventricle	heart
13	chr6:34372400-34379000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:34372400-34389400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:34373000-34382400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:34374000-34379200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:34375200-34382400	Weak transcription	K562	blood
18	chr6:34375200-34383600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:34375400-34379800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:34375400-34380000	Weak transcription	Thymus	Thymus
21	chr6:34375600-34383600	Weak transcription	Fetal Brain Female	brain
22	chr6:34375800-34382000	Weak transcription	Dnd41	blood
23	chr6:34376600-34378400	Weak transcription	Fetal Stomach	stomach
24	chr6:34376600-34382600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:34376800-34380000	Weak transcription	GM12878-XiMat	blood
26	chr6:34377000-34378000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:34377200-34377600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:34377200-34377600	Enhancers	Adipose Nuclei	Adipose
29	chr6:34377200-34377800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:34377200-34377800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:34377200-34378000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:34377200-34379600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:34377200-34382400	Weak transcription	Small Intestine	intestine
34	chr6:34377200-34384800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:34377400-34377600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:34377400-34378000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:34377400-34380400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:34377400-34380400	Weak transcription	HSMM	muscle
39	chr6:34377400-34382000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:34377400-34382000	Weak transcription	Brain Germinal Matrix	brain
41	chr6:34377400-34382400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:34377400-34382600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:34377400-34382600	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:34377400-34383400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:34377400-34383400	Weak transcription	Lung	lung
46	chr6:34377400-34383800	Weak transcription	Esophagus	oesophagus
47	chr6:34377400-34385000	Weak transcription	Psoas Muscle	Psoas

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