Variant report

Variant	rs206931
Chromosome Location	chr6:34300499-34300500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34299992..34302647-chr6:34315891..34318733,2	MCF-7	breast:
2	chr6:34285140..34288176-chr6:34300410..34302551,3	MCF-7	breast:
3	chr6:34300486..34302209-chr6:34305816..34308305,2	MCF-7	breast:
4	chr6:34299261..34302272-chr6:34303453..34305944,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10947509	1.00[AMR][1000 genomes]
rs172280	1.00[YRI][hapmap]
rs182280	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1889733	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs206922	1.00[YRI][hapmap]
rs206928	1.00[YRI][hapmap]
rs206929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206932	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206933	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs206938	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs206939	1.00[AMR][1000 genomes]
rs206940	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2395557	1.00[AMR][1000 genomes]
rs2395558	1.00[AMR][1000 genomes]
rs2395563	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2395565	1.00[AMR][1000 genomes]
rs2395566	1.00[AMR][1000 genomes]
rs2840286	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3843524	1.00[AMR][1000 genomes]
rs3846865	1.00[AMR][1000 genomes]
rs3846870	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3857561	1.00[AMR][1000 genomes]
rs443351	1.00[AMR][1000 genomes]
rs453919	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs460389	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs462194	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs466031	1.00[YRI][hapmap]
rs4713778	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6457780	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6908420	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6918865	1.00[AMR][1000 genomes]
rs7760590	1.00[AMR][1000 genomes]
rs7773372	1.00[YRI][hapmap]
rs7774674	1.00[AMR][1000 genomes]
rs9394233	1.00[YRI][hapmap]
rs9461986	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	esv1794528	chr6:34267024-34308816	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34261800-34330800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:34262200-34301200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:34274400-34306400	Weak transcription	Brain Germinal Matrix	brain
4	chr6:34274400-34309000	Weak transcription	NHDF-Ad	bronchial
5	chr6:34284000-34301600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:34284000-34308200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:34284800-34310800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:34285000-34305600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr6:34285200-34330600	Weak transcription	Thymus	Thymus
10	chr6:34285400-34305200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:34285400-34305400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:34285400-34307800	Weak transcription	Liver	Liver
13	chr6:34285800-34308800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:34285800-34326600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:34286000-34308200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:34286600-34302800	Weak transcription	Osteobl	bone
17	chr6:34287000-34301200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:34287000-34305000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:34287400-34300800	Weak transcription	Brain Angular Gyrus	brain
20	chr6:34287400-34300800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:34287400-34301600	Weak transcription	Spleen	Spleen
22	chr6:34287400-34304000	Weak transcription	Colonic Mucosa	Colon
23	chr6:34287600-34305400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:34287600-34305400	Weak transcription	Right Atrium	heart
25	chr6:34287600-34306400	Weak transcription	Fetal Lung	lung
26	chr6:34287600-34309200	Weak transcription	Pancreas	Pancrea
27	chr6:34289000-34325200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:34289400-34308200	Weak transcription	Fetal Intestine Large	intestine
29	chr6:34291400-34301800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:34291800-34307000	Weak transcription	Hela-S3	cervix
31	chr6:34292400-34305800	Weak transcription	HMEC	breast
32	chr6:34292600-34308200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:34292800-34302000	Weak transcription	HSMMtube	muscle
34	chr6:34293000-34301200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:34293000-34304600	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:34293000-34305000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr6:34293000-34305200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:34293000-34305400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:34293000-34306400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:34293000-34308200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:34293200-34300600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:34293200-34300600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:34293200-34300800	Weak transcription	Psoas Muscle	Psoas
44	chr6:34293200-34301800	Weak transcription	NHEK	skin
45	chr6:34293400-34304600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:34293400-34305800	Weak transcription	Placenta	Placenta
47	chr6:34293400-34307600	Weak transcription	Fetal Thymus	thymus
48	chr6:34294000-34308800	Weak transcription	NH-A	brain
49	chr6:34294800-34305600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr6:34295000-34302800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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