Variant report

Variant	rs4661150
Chromosome Location	chr1:155903310-155903311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:36)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:36 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155893064..155900339-chr1:155902644..155906758,10	MCF-7	breast:
2	chr1:155884685..155887333-chr1:155903163..155905459,3	MCF-7	breast:
3	chr1:155902449..155905054-chr1:155910368..155915421,5	MCF-7	breast:
4	chr1:155902752..155906488-chr1:155946119..155948945,5	MCF-7	breast:
5	chr1:155902819..155904971-chr1:156082922..156085849,2	K562	blood:
6	chr1:155901303..155903667-chr1:156040998..156043526,2	K562	blood:
7	chr1:155902248..155903892-chr1:155972223..155974691,2	K562	blood:
8	chr1:155824896..155829386-chr1:155902844..155905236,4	MCF-7	breast:
9	chr1:155902986..155905727-chr1:155989614..155992044,2	MCF-7	breast:
10	chr1:155902774..155905937-chr1:155970220..155974829,6	K562	blood:
11	chr1:155902649..155906864-chr1:155928278..155934368,7	MCF-7	breast:
12	chr1:155879114..155881367-chr1:155902425..155905245,4	MCF-7	breast:
13	chr1:155902799..155907084-chr1:156021354..156025347,11	K562	blood:
14	chr1:155874080..155876407-chr1:155902022..155904119,2	MCF-7	breast:
15	chr1:155902135..155904272-chr1:155989311..155991298,2	MCF-7	breast:
16	chr1:155902926..155905486-chr1:155988342..155992219,3	K562	blood:
17	chr1:155901793..155904687-chr1:155910352..155912592,3	MCF-7	breast:
18	chr1:155902871..155906324-chr1:155958036..155960843,4	K562	blood:
19	chr1:155902972..155905635-chr1:155940527..155942498,2	K562	blood:
20	chr1:155902827..155906202-chr1:155937016..155941458,5	MCF-7	breast:
21	chr1:155826962..155828994-chr1:155903211..155904841,2	K562	blood:
22	chr1:155902875..155906059-chr1:156051194..156053786,3	MCF-7	breast:
23	chr1:155878384..155883302-chr1:155900472..155905868,7	K562	blood:
24	chr1:155902066..155906841-chr1:156030418..156033688,4	MCF-7	breast:
25	chr1:155902617..155905990-chr1:156022859..156025987,6	MCF-7	breast:
26	chr1:155900582..155906000-chr1:156022334..156026632,8	MCF-7	breast:
27	chr1:155902817..155905494-chr1:155972290..155974046,2	MCF-7	breast:
28	chr1:155902826..155904472-chr1:155940527..155942381,2	K562	blood:
29	chr1:155902613..155905963-chr1:155944776..155950602,8	MCF-7	breast:
30	chr1:155902334..155905932-chr1:156022257..156026290,7	K562	blood:
31	chr1:155879409..155881796-chr1:155901375..155905401,4	MCF-7	breast:
32	chr1:155885238..155887590-chr1:155902969..155906233,3	K562	blood:
33	chr1:155902781..155905486-chr1:155988342..155993651,4	K562	blood:
34	chr1:155902096..155906333-chr1:155944635..155950706,8	K562	blood:
35	chr1:155902685..155905586-chr1:155957752..155961229,4	MCF-7	breast:
36	chr1:155902760..155905677-chr1:155945999..155951456,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000224276	Chromatin interaction
ENSG00000252808	Chromatin interaction
ENSG00000116584	Chromatin interaction
ENSG00000160789	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000132698	Chromatin interaction
ENSG00000273002	Chromatin interaction
ENSG00000116580	Chromatin interaction
ENSG00000163479	Chromatin interaction
ENSG00000143622	Chromatin interaction
ENSG00000116586	Chromatin interaction
ENSG00000160803	Chromatin interaction
ENSG00000173080	Chromatin interaction
ENSG00000254726	Chromatin interaction
ENSG00000132718	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12722806	1.00[AMR][1000 genomes]
rs1889531	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8179394	0.82[AFR][1000 genomes]
rs822517	1.00[AMR][1000 genomes]
rs822518	1.00[AMR][1000 genomes]
rs864770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155897400-155903400	Weak transcription	Aorta	Aorta
2	chr1:155897800-155904000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:155899400-155903600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:155900000-155903400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:155900000-155903600	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:155900000-155903600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
7	chr1:155900200-155903400	Genic enhancers	Fetal Lung	lung
8	chr1:155900200-155903400	Transcr. at gene 5' and 3'	HMEC	breast
9	chr1:155900200-155903600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:155900200-155903600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:155900400-155903400	Enhancers	Fetal Heart	heart
12	chr1:155900600-155903800	Transcr. at gene 5' and 3'	NHLF	lung
13	chr1:155901000-155904000	Transcr. at gene 5' and 3'	Dnd41	blood
14	chr1:155901000-155904400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:155901200-155903600	Transcr. at gene 5' and 3'	NHEK	skin
16	chr1:155901400-155903400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:155901400-155903600	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:155901400-155903600	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
19	chr1:155901400-155903800	Transcr. at gene 5' and 3'	K562	blood
20	chr1:155901800-155903400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:155902000-155903400	Enhancers	Primary B cells from cord blood	blood
22	chr1:155902000-155903400	Enhancers	Fetal Brain Male	brain
23	chr1:155902000-155903400	Enhancers	Spleen	Spleen
24	chr1:155902000-155905000	Active TSS	Right Ventricle	heart
25	chr1:155902200-155903400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr1:155902200-155903400	Weak transcription	Lung	lung
27	chr1:155902200-155903600	Flanking Active TSS	HUVEC	blood vessel
28	chr1:155902400-155903400	Enhancers	Thymus	Thymus
29	chr1:155902400-155903600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:155902600-155903400	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr1:155902600-155903400	Weak transcription	Small Intestine	intestine
32	chr1:155902600-155903400	Transcr. at gene 5' and 3'	HSMM	muscle
33	chr1:155902600-155903600	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
34	chr1:155902600-155903600	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
35	chr1:155902600-155905000	Active TSS	Duodenum Mucosa	Duodenum
36	chr1:155902800-155903400	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
37	chr1:155902800-155903400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:155902800-155903400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr1:155902800-155903400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr1:155902800-155903400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr1:155902800-155903600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
42	chr1:155902800-155903600	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr1:155902800-155903600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr1:155902800-155903600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr1:155902800-155903800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr1:155902800-155904000	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr1:155902800-155904000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr1:155902800-155904800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr1:155903000-155903400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr1:155903000-155903400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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