Variant report

Variant	rs822518
Chromosome Location	chr1:155841517-155841518
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155836334..155839218-chr1:155841025..155842829,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RXFP4-3	chr1:155839565-155841887	NONHSAT006771

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12722806	0.86[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1889531	0.86[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs348200	1.00[ASW][hapmap];0.93[MKK][hapmap]
rs4661150	1.00[AMR][1000 genomes]
rs822517	1.00[ASW][hapmap];0.82[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs864770	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155830000-155869000	Weak transcription	Gastric	stomach
2	chr1:155830400-155843800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:155830400-155843800	Weak transcription	Lung	lung
4	chr1:155830400-155865800	Weak transcription	Esophagus	oesophagus
5	chr1:155830600-155850200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:155830600-155866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:155830800-155850400	Weak transcription	Adipose Nuclei	Adipose
8	chr1:155830800-155852000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr1:155831000-155848800	Weak transcription	Fetal Intestine Large	intestine
10	chr1:155831000-155849200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:155831000-155850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:155831000-155851000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:155831000-155862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:155831000-155862800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:155831000-155863000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:155831200-155862800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr1:155831400-155859000	Weak transcription	HUVEC	blood vessel
18	chr1:155834600-155850200	Weak transcription	HSMM	muscle
19	chr1:155836200-155842000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:155836400-155866400	Weak transcription	Primary B cells from cord blood	blood
21	chr1:155837200-155843000	Weak transcription	Fetal Thymus	thymus
22	chr1:155837400-155841800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:155837400-155844400	Enhancers	Fetal Brain Male	brain
24	chr1:155837600-155863000	Weak transcription	Colonic Mucosa	Colon
25	chr1:155838000-155841800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:155838200-155841800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:155838200-155843400	Weak transcription	Osteobl	bone
28	chr1:155838400-155841600	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
29	chr1:155839000-155841800	Strong transcription	Fetal Intestine Small	intestine
30	chr1:155839800-155843400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr1:155840000-155842200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr1:155840000-155850200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr1:155840200-155842600	Enhancers	Fetal Muscle Leg	muscle
34	chr1:155840400-155841600	Enhancers	Fetal Heart	heart
35	chr1:155840400-155841600	Enhancers	Stomach Smooth Muscle	stomach
36	chr1:155840400-155841800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr1:155840400-155842000	Enhancers	Right Atrium	heart
38	chr1:155840400-155842600	Enhancers	Fetal Muscle Trunk	muscle
39	chr1:155840400-155842800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:155840400-155850000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr1:155840600-155841800	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr1:155840600-155841800	Enhancers	Right Ventricle	heart
43	chr1:155840800-155841600	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr1:155840800-155841800	Enhancers	HSMMtube	muscle
45	chr1:155840800-155842800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr1:155841000-155841600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:155841000-155841600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr1:155841000-155841600	Enhancers	Colon Smooth Muscle	Colon
49	chr1:155841000-155841600	Enhancers	Fetal Lung	lung
50	chr1:155841000-155841600	Enhancers	Left Ventricle	heart

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