Variant report

Variant	rs4664121
Chromosome Location	chr2:153531106-153531107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:153529339..153532931-chr2:153537467..153540997,3	K562	blood:
2	chr2:153529995..153532744-chr2:153533957..153536100,3	K562	blood:
3	chr2:153529995..153533178-chr2:153533957..153537180,5	K562	blood:
4	chr2:153525116..153526635-chr2:153528913..153531801,2	MCF-7	breast:
5	chr2:153508390..153510353-chr2:153529537..153532383,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10172024	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs10181485	0.91[ASN][1000 genomes]
rs10185455	0.85[YRI][hapmap]
rs10200667	0.88[ASN][1000 genomes]
rs1036526	0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs1065266	0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs10931229	0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs1128804	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs11544718	0.91[ASN][1000 genomes]
rs11899051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477881	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12621561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693415	0.81[CHB][hapmap]
rs12997814	0.91[ASN][1000 genomes]
rs13005368	0.88[ASN][1000 genomes]
rs13010731	0.82[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs13017428	0.88[ASN][1000 genomes]
rs13031469	0.85[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs13419068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370498	0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs1437678	0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs16831548	0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs16831556	0.82[CHB][hapmap]
rs16831740	0.81[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs17328734	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs17400645	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1962313	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1986743	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1992146	0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs2118377	0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs2304556	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2304559	0.91[ASN][1000 genomes]
rs2346534	0.91[ASN][1000 genomes]
rs2346537	0.83[CHB][hapmap]
rs2346539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2346540	1.00[ASN][1000 genomes]
rs2346541	0.88[ASN][1000 genomes]
rs2346542	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs2346543	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2346549	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2346550	0.81[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs3171980	0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs3175	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs34668102	0.91[ASN][1000 genomes]
rs3748937	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3748938	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3748939	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs3762503	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs3762506	0.91[ASN][1000 genomes]
rs3762507	0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs3811566	0.88[ASN][1000 genomes]
rs4233660	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4267470	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4580346	0.91[ASN][1000 genomes]
rs4664122	0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs4664601	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs4664602	0.87[ASN][1000 genomes]
rs4664604	0.82[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.88[ASN][1000 genomes]
rs4664605	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4664606	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4664607	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4664609	0.97[ASN][1000 genomes]
rs4664610	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs56283545	0.81[ASN][1000 genomes]
rs61049574	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6434128	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs6434161	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6434162	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6713779	0.91[ASN][1000 genomes]
rs6723574	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6727279	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6744923	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs6746079	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746321	0.91[ASN][1000 genomes]
rs6748160	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs715047	0.81[ASN][1000 genomes]
rs72871191	1.00[ASN][1000 genomes]
rs72872607	1.00[ASN][1000 genomes]
rs7556673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558920	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7559219	0.88[ASN][1000 genomes]
rs7560393	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7570759	0.88[ASN][1000 genomes]
rs7576152	0.85[ASN][1000 genomes]
rs7576847	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7582253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7589899	0.81[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7592669	0.88[ASN][1000 genomes]
rs7593347	0.85[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs7596408	0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs7599946	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7605709	0.88[ASN][1000 genomes]
rs7608603	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9288121	0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9288125	0.86[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs9288127	0.91[ASN][1000 genomes]
rs9646744	0.88[ASN][1000 genomes]
rs9789505	1.00[ASN][1000 genomes]
rs9789521	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv834420	chr2:153339646-153535460	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv834421	chr2:153470109-153664235	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv3693438	chr2:153505376-153718246	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153497000-153531800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:153501400-153531800	Weak transcription	Aorta	Aorta
3	chr2:153504400-153538200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:153505000-153540200	Strong transcription	Fetal Thymus	thymus
5	chr2:153505400-153539200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:153505400-153540200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:153505600-153534400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:153505600-153537000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:153505600-153538400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:153506000-153538000	Strong transcription	Liver	Liver
11	chr2:153506200-153539800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:153506200-153546800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr2:153507000-153538400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:153507000-153541600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:153507200-153538200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:153508000-153542000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr2:153508000-153550800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr2:153508200-153532800	Strong transcription	HSMM	muscle
19	chr2:153508200-153533600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:153508400-153537600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr2:153508400-153537800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:153508400-153538000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:153508400-153538200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:153508400-153538400	Strong transcription	A549	lung
25	chr2:153508600-153539600	Strong transcription	Dnd41	blood
26	chr2:153508800-153535000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr2:153508800-153540400	Strong transcription	Primary hematopoietic stem cells	blood
28	chr2:153509000-153539600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr2:153509200-153551200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr2:153509400-153538400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:153509800-153535000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr2:153509800-153540000	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr2:153510400-153539400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr2:153510400-153539600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr2:153510400-153540200	Strong transcription	Primary B cells from peripheral blood	blood
36	chr2:153510600-153536000	Strong transcription	Fetal Intestine Large	intestine
37	chr2:153510600-153537800	Strong transcription	NH-A	brain
38	chr2:153510600-153539800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr2:153510600-153540800	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr2:153510800-153538400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr2:153511000-153537800	Strong transcription	Adipose Nuclei	Adipose
42	chr2:153511000-153538200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:153511000-153538600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr2:153511000-153539600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:153511600-153533800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr2:153511600-153538000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr2:153511800-153537800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr2:153512000-153538600	Strong transcription	K562	blood
49	chr2:153512200-153533400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr2:153512400-153533400	Strong transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links