Variant report

Variant	rs4667304
Chromosome Location	chr2:190587103-190587104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190571340..190573734-chr2:190584560..190587227,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1030136	0.88[EUR][1000 genomes]
rs12053254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12618246	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12618262	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs16832155	0.86[EUR][1000 genomes]
rs16832158	0.88[EUR][1000 genomes]
rs2284865	0.84[ASN][1000 genomes]
rs3762543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs3828267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4666782	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4853634	0.83[EUR][1000 genomes]
rs4920654	0.86[EUR][1000 genomes]
rs4920657	0.94[EUR][1000 genomes]
rs4920660	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs4920662	0.86[EUR][1000 genomes]
rs5742967	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs5742981	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs5743004	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs5743030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5743044	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5743100	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5743112	0.94[EUR][1000 genomes]
rs5743116	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs5743117	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs5743202	0.88[EUR][1000 genomes]
rs5743208	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs6736360	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs733318	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs73979023	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73979024	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190540800-190592600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:190540800-190611800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:190540800-190618400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:190541600-190617000	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:190550800-190591400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr2:190550800-190617000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:190550800-190626800	Weak transcription	Right Ventricle	heart
8	chr2:190551200-190603400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:190551200-190617000	Weak transcription	HSMM	muscle
10	chr2:190555600-190593000	Weak transcription	Fetal Lung	lung
11	chr2:190557400-190617000	Weak transcription	Brain Angular Gyrus	brain
12	chr2:190563400-190607800	Weak transcription	Primary T cells from cord blood	blood
13	chr2:190563600-190593200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:190563600-190608400	Weak transcription	Brain Anterior Caudate	brain
15	chr2:190563600-190611800	Weak transcription	Brain Substantia Nigra	brain
16	chr2:190563600-190612600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr2:190564000-190593200	Weak transcription	Liver	Liver
18	chr2:190568200-190594200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:190568200-190611600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:190571600-190606800	Weak transcription	Primary B cells from cord blood	blood
21	chr2:190571600-190607800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:190571600-190608400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:190571600-190612400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:190571800-190608600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr2:190572000-190608400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:190573000-190606600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr2:190573000-190611000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr2:190575000-190615800	Weak transcription	Fetal Kidney	kidney
29	chr2:190576800-190592600	Weak transcription	Adipose Nuclei	Adipose
30	chr2:190576800-190593000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:190576800-190608200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr2:190576800-190609000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:190576800-190627000	Weak transcription	Pancreas	Pancrea
34	chr2:190577000-190604400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr2:190577000-190611600	Weak transcription	Ovary	ovary
36	chr2:190577000-190622600	Weak transcription	Aorta	Aorta
37	chr2:190577200-190588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:190577200-190593200	Weak transcription	Left Ventricle	heart
39	chr2:190577200-190611800	Weak transcription	Fetal Stomach	stomach
40	chr2:190580000-190611000	Weak transcription	Fetal Intestine Large	intestine
41	chr2:190580000-190611600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr2:190583000-190626800	Weak transcription	Psoas Muscle	Psoas
43	chr2:190585200-190608200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr2:190585400-190606600	Weak transcription	Fetal Muscle Trunk	muscle

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