Variant report

Variant	rs4920654
Chromosome Location	chr2:190746772-190746773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190740527..190742741-chr2:190745619..190747127,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1030136	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11688123	0.83[ASN][1000 genomes]
rs12053254	0.86[EUR][1000 genomes]
rs12618262	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12997257	0.87[ASN][1000 genomes]
rs16832155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16832158	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs256539	0.87[ASN][1000 genomes]
rs256540	0.87[ASN][1000 genomes]
rs256541	0.84[ASN][1000 genomes]
rs256542	0.83[ASN][1000 genomes]
rs256549	0.84[ASN][1000 genomes]
rs256550	0.84[ASN][1000 genomes]
rs256551	0.83[ASN][1000 genomes]
rs256552	0.83[ASN][1000 genomes]
rs256556	0.83[ASN][1000 genomes]
rs256562	0.83[ASN][1000 genomes]
rs256563	0.83[ASN][1000 genomes]
rs256564	0.83[ASN][1000 genomes]
rs256567	0.84[ASN][1000 genomes]
rs256572	0.82[ASN][1000 genomes]
rs256580	0.82[ASN][1000 genomes]
rs4667304	0.86[EUR][1000 genomes]
rs4853634	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4920657	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4920658	0.82[EUR][1000 genomes]
rs4920660	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4920662	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5743030	0.86[EUR][1000 genomes]
rs5743044	0.88[EUR][1000 genomes]
rs5743100	0.91[EUR][1000 genomes]
rs5743112	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5743116	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5743117	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5743202	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5743208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6736360	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs733318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7593661	0.83[ASN][1000 genomes]
rs7603201	0.83[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4920654	ORMDL1	Cis_1M	lymphoblastoid	RTeQTL
rs4920654	ASNSD1	cis	Esophagus Muscularis	GTEx
rs4920654	PMS1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190744600-190758200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:190746200-190747000	Weak transcription	Fetal Kidney	kidney
3	chr2:190746200-190750000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:190746400-190747200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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