Variant report

Variant	rs4853634
Chromosome Location	chr2:190779231-190779232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190646802..190649135-chr2:190778761..190780447,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064933	Chromatin interaction
ENSG00000128699	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1030136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11688123	0.86[ASN][1000 genomes]
rs12053254	0.83[EUR][1000 genomes]
rs12479375	0.86[JPT][hapmap]
rs12618262	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12997257	0.82[ASN][1000 genomes]
rs16832155	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16832158	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs256539	0.82[ASN][1000 genomes]
rs256540	0.82[ASN][1000 genomes]
rs256541	0.83[ASN][1000 genomes]
rs256542	0.85[ASN][1000 genomes]
rs256549	0.83[ASN][1000 genomes]
rs256550	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs256551	0.82[ASN][1000 genomes]
rs256552	0.82[ASN][1000 genomes]
rs256556	0.82[ASN][1000 genomes]
rs256562	0.82[ASN][1000 genomes]
rs256563	0.82[ASN][1000 genomes]
rs256564	0.82[ASN][1000 genomes]
rs256572	0.81[ASN][1000 genomes]
rs256580	0.81[ASN][1000 genomes]
rs4666782	0.85[CEU][hapmap]
rs4667304	0.83[EUR][1000 genomes]
rs4920654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4920657	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4920660	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4920662	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5742981	0.85[CEU][hapmap]
rs5743004	0.85[CEU][hapmap]
rs5743030	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs5743044	0.85[EUR][1000 genomes]
rs5743100	0.88[EUR][1000 genomes]
rs5743112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5743116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5743117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5743202	0.86[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5743208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6736360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs733318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7593661	0.86[ASN][1000 genomes]
rs7603201	0.86[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4853634	LOC51240	cis	multi-tissue	Pritchard
rs4853634	ORMDL1	Cis_1M	lymphoblastoid	RTeQTL
rs4853634	ORMDL1	cis	multi-tissue	Pritchard
rs4853634	PMS1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190778600-190779800	Enhancers	HSMM	muscle

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