Variant report

Variant	rs4678470
Chromosome Location	chr3:34526874-34526875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1191618	0.81[EUR][1000 genomes]
rs1191621	0.81[EUR][1000 genomes]
rs1191623	0.93[EUR][1000 genomes]
rs1191626	0.91[EUR][1000 genomes]
rs1529069	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1529071	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1529074	0.95[EUR][1000 genomes]
rs2222796	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2336652	0.93[EUR][1000 genomes]
rs4678688	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62249100	0.84[EUR][1000 genomes]
rs9852736	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876683	chr3:34451940-34536095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876684	chr3:34502652-34566947	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34525400-34533200	Weak transcription	Aorta	Aorta
2	chr3:34525800-34527200	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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