Variant report
| Variant | rs62249100 |
|---|---|
| Chromosome Location | chr3:34377349-34377350 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PDCD6IP-5 | chr3:34377233-34377517 | l_2344_chr3:34377232-34452128_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs1191618 | 0.82[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1191620 | 0.84[EUR][1000 genomes] |
| rs1191621 | 0.87[EUR][1000 genomes] |
| rs1191623 | 0.90[EUR][1000 genomes] |
| rs1191626 | 0.87[EUR][1000 genomes] |
| rs1529069 | 0.83[EUR][1000 genomes] |
| rs1529071 | 0.84[EUR][1000 genomes] |
| rs1529074 | 0.88[EUR][1000 genomes] |
| rs2222796 | 0.85[EUR][1000 genomes] |
| rs2336652 | 0.85[EUR][1000 genomes] |
| rs2679561 | 0.88[AFR][1000 genomes] |
| rs2950999 | 0.82[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4678470 | 0.84[EUR][1000 genomes] |
| rs4678688 | 0.83[EUR][1000 genomes] |
| rs62248541 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9852736 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001599 | chr3:34149575-34437701 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv536533 | chr3:34149575-34437701 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv876682 | chr3:34149814-34401451 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv916961 | chr3:34203879-34506554 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
