Variant report

Variant	rs62248541
Chromosome Location	chr3:34365349-34365350
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1191618	0.92[EUR][1000 genomes]
rs1191620	0.90[EUR][1000 genomes]
rs1191621	0.87[EUR][1000 genomes]
rs1191623	0.85[EUR][1000 genomes]
rs1191626	0.87[EUR][1000 genomes]
rs1529069	0.83[EUR][1000 genomes]
rs1529074	0.83[EUR][1000 genomes]
rs2222796	0.85[EUR][1000 genomes]
rs2336652	0.85[EUR][1000 genomes]
rs2950999	0.90[EUR][1000 genomes]
rs4678688	0.83[EUR][1000 genomes]
rs62249100	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34363800-34365600	Enhancers	Fetal Thymus	thymus
2	chr3:34364000-34365600	Enhancers	Dnd41	blood
3	chr3:34364000-34366400	Enhancers	Thymus	Thymus
4	chr3:34365000-34365400	Flanking Active TSS	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links