Variant report

Variant	rs1529069
Chromosome Location	chr3:34451465-34451466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1191618	0.85[EUR][1000 genomes]
rs1191620	0.83[EUR][1000 genomes]
rs1191621	0.81[EUR][1000 genomes]
rs1191623	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1191626	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1529071	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1529074	0.90[EUR][1000 genomes]
rs2222796	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2336652	0.93[EUR][1000 genomes]
rs2950999	0.83[EUR][1000 genomes]
rs4678470	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4678688	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62248541	0.83[EUR][1000 genomes]
rs62249100	0.83[EUR][1000 genomes]
rs9852736	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34450600-34452200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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