Variant report

Variant	rs1191623
Chromosome Location	chr3:34424896-34424897
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1191618	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1191620	0.85[EUR][1000 genomes]
rs1191621	0.88[EUR][1000 genomes]
rs1191626	0.97[EUR][1000 genomes]
rs1529069	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1529071	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1529074	0.98[EUR][1000 genomes]
rs2222796	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2336652	0.95[EUR][1000 genomes]
rs2679561	0.84[AFR][1000 genomes]
rs2950999	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4678470	0.93[EUR][1000 genomes]
rs4678688	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62248541	0.85[EUR][1000 genomes]
rs62249100	0.90[EUR][1000 genomes]
rs9852736	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34423000-34425000	Enhancers	Stomach Mucosa	stomach
2	chr3:34423000-34425200	Enhancers	Duodenum Mucosa	Duodenum
3	chr3:34423200-34430600	Weak transcription	Aorta	Aorta
4	chr3:34424000-34425000	Enhancers	Small Intestine	intestine
5	chr3:34424600-34428200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links