Variant report

Variant	rs4680524
Chromosome Location	chr3:159516667-159516668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159504199..159507462-chr3:159515627..159518397,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10936179	0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs1107061	0.96[ASN][1000 genomes]
rs11715088	0.96[ASN][1000 genomes]
rs12490735	0.94[ASN][1000 genomes]
rs12491535	0.98[ASN][1000 genomes]
rs1497762	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs1553081	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs2010748	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2169305	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs3851359	0.96[ASN][1000 genomes]
rs3889309	0.96[ASN][1000 genomes]
rs3889310	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4679863	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4679865	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4680521	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4680525	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56107912	0.98[ASN][1000 genomes]
rs62270387	0.98[ASN][1000 genomes]
rs6763138	0.94[ASN][1000 genomes]
rs6780187	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7639937	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159502000-159522800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:159504000-159518600	Enhancers	Brain Hippocampus Middle	brain
3	chr3:159504200-159518400	Enhancers	Brain Substantia Nigra	brain
4	chr3:159506000-159518200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:159506200-159522600	Weak transcription	Fetal Kidney	kidney
6	chr3:159506400-159522400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:159508600-159520600	Enhancers	Brain Cingulate Gyrus	brain
8	chr3:159509400-159517200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:159512400-159517600	Enhancers	Adipose Nuclei	Adipose
10	chr3:159512600-159520800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:159513000-159516800	Weak transcription	Fetal Stomach	stomach
12	chr3:159513200-159517200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:159513400-159522800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:159513400-159523600	Enhancers	Rectal Smooth Muscle	rectum
15	chr3:159513600-159517600	Enhancers	NH-A	brain
16	chr3:159513800-159517000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:159513800-159518200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:159514000-159517400	Enhancers	A549	lung
19	chr3:159514000-159517800	Enhancers	HMEC	breast
20	chr3:159514400-159516800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:159514400-159516800	Weak transcription	Right Ventricle	heart
22	chr3:159514400-159517000	Weak transcription	Left Ventricle	heart
23	chr3:159514400-159519200	Enhancers	Colon Smooth Muscle	Colon
24	chr3:159514400-159519400	Enhancers	Stomach Smooth Muscle	stomach
25	chr3:159514600-159516800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:159514600-159516800	Weak transcription	HSMMtube	muscle
27	chr3:159515000-159516800	Weak transcription	Brain Angular Gyrus	brain
28	chr3:159515000-159516800	Weak transcription	NHEK	skin
29	chr3:159515200-159516800	Weak transcription	HSMM	muscle
30	chr3:159515200-159516800	Weak transcription	NHDF-Ad	bronchial
31	chr3:159515400-159517800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:159515400-159518200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:159515400-159518600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:159515800-159518000	Enhancers	Placenta Amnion	Placenta Amnion
35	chr3:159515800-159518200	Enhancers	NHLF	lung
36	chr3:159515800-159518400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr3:159515800-159518800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:159515800-159522600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:159516000-159517000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr3:159516000-159522800	Weak transcription	Aorta	Aorta
41	chr3:159516000-159524000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:159516200-159517200	Enhancers	Right Atrium	heart
43	chr3:159516200-159517400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr3:159516200-159517400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:159516200-159517600	Enhancers	Placenta	Placenta
46	chr3:159516200-159517800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:159516200-159518200	Enhancers	Lung	lung
48	chr3:159516200-159520200	Weak transcription	HUVEC	blood vessel
49	chr3:159516400-159517200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:159516400-159518400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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