Variant report

Variant	rs1497762
Chromosome Location	chr3:159518918-159518919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159481740..159483484-chr3:159518164..159519997,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1009058	0.89[CEU][hapmap]
rs10936179	0.94[CEU][hapmap];0.94[CHB][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1107061	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11715088	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12490735	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12491535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1675496	0.89[CEU][hapmap];0.83[GIH][hapmap]
rs2010748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2169305	0.90[CHB][hapmap];0.93[CHD][hapmap];0.87[ASN][1000 genomes]
rs3851359	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3889309	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3889310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4679863	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4679865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680524	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs56107912	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62270387	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62270397	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6763138	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6771478	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6780187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7639937	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9878736	0.85[CEU][hapmap];0.82[CHB][hapmap]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159502000-159522800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:159506200-159522600	Weak transcription	Fetal Kidney	kidney
3	chr3:159506400-159522400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:159508600-159520600	Enhancers	Brain Cingulate Gyrus	brain
5	chr3:159512600-159520800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr3:159513400-159522800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:159513400-159523600	Enhancers	Rectal Smooth Muscle	rectum
8	chr3:159514400-159519200	Enhancers	Colon Smooth Muscle	Colon
9	chr3:159514400-159519400	Enhancers	Stomach Smooth Muscle	stomach
10	chr3:159515800-159522600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:159516000-159522800	Weak transcription	Aorta	Aorta
12	chr3:159516000-159524000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:159516200-159520200	Weak transcription	HUVEC	blood vessel
14	chr3:159516400-159522400	Enhancers	Osteobl	bone
15	chr3:159516800-159519000	Enhancers	Fetal Intestine Large	intestine
16	chr3:159516800-159519000	Enhancers	NHDF-Ad	bronchial
17	chr3:159517000-159522400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:159517200-159520600	Weak transcription	Fetal Stomach	stomach
19	chr3:159517200-159522000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:159517200-159522200	Weak transcription	HSMMtube	muscle
21	chr3:159517200-159522400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:159517200-159523200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:159517200-159524000	Weak transcription	Liver	Liver
24	chr3:159517400-159520000	Weak transcription	Brain Anterior Caudate	brain
25	chr3:159517400-159522200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:159517600-159520400	Weak transcription	NH-A	brain
27	chr3:159517600-159522400	Weak transcription	Right Ventricle	heart
28	chr3:159517600-159522600	Weak transcription	Adipose Nuclei	Adipose
29	chr3:159517600-159523200	Weak transcription	Placenta	Placenta
30	chr3:159517600-159524200	Weak transcription	NHEK	skin
31	chr3:159517800-159519000	Enhancers	A549	lung
32	chr3:159517800-159522600	Weak transcription	HMEC	breast
33	chr3:159518000-159524400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:159518200-159520400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:159518200-159522200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:159518200-159522800	Weak transcription	Fetal Intestine Small	intestine
37	chr3:159518200-159522800	Weak transcription	Lung	lung
38	chr3:159518400-159519000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr3:159518400-159520000	Weak transcription	Brain Substantia Nigra	brain
40	chr3:159518400-159522400	Weak transcription	Right Atrium	heart
41	chr3:159518400-159531200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:159518600-159519600	Weak transcription	Brain Angular Gyrus	brain
43	chr3:159518600-159519800	Weak transcription	HSMM	muscle
44	chr3:159518600-159520200	Weak transcription	Brain Hippocampus Middle	brain
45	chr3:159518600-159520400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:159518600-159521200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:159518600-159522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:159518600-159522400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:159518600-159522400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:159518600-159523000	Enhancers	Fetal Heart	heart

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