Variant report

Variant	rs6771478
Chromosome Location	chr3:159537386-159537387
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159531580..159534409-chr3:159536227..159539065,5	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10936179	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10936181	0.81[ASN][1000 genomes]
rs1107061	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11715088	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12490735	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12491535	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1497762	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1553081	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2010748	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3851359	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3889309	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3889310	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4679863	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4679865	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4680521	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4680525	0.98[ASN][1000 genomes]
rs56107912	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62270387	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62270397	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6763138	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6780187	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7639937	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9878736	0.94[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159523400-159537800	Weak transcription	NH-A	brain
2	chr3:159523400-159541200	Weak transcription	Fetal Kidney	kidney
3	chr3:159523400-159541400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:159524600-159538600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:159525600-159540600	Weak transcription	NHLF	lung
6	chr3:159525800-159539400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:159526400-159541400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:159531400-159538000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:159532000-159537600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:159532200-159540600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:159532200-159541600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:159532400-159538400	Weak transcription	A549	lung
13	chr3:159532400-159539400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:159532400-159541200	Weak transcription	HUVEC	blood vessel
15	chr3:159532400-159546400	Weak transcription	Fetal Stomach	stomach
16	chr3:159532600-159541400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:159532800-159537600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:159533000-159539600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr3:159533200-159537800	Weak transcription	HSMM	muscle
20	chr3:159533400-159537600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:159533400-159537600	Weak transcription	NHEK	skin
22	chr3:159533800-159538600	Weak transcription	Osteobl	bone
23	chr3:159534000-159537400	Enhancers	Placenta	Placenta
24	chr3:159534400-159537800	Enhancers	Right Ventricle	heart
25	chr3:159534400-159541200	Enhancers	Brain Angular Gyrus	brain
26	chr3:159535200-159542200	Enhancers	Brain Cingulate Gyrus	brain
27	chr3:159535800-159537800	Enhancers	Spleen	Spleen
28	chr3:159535800-159538600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:159536000-159541000	Weak transcription	Stomach Mucosa	stomach
30	chr3:159536200-159538000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:159536200-159538400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:159536400-159538600	Weak transcription	HSMMtube	muscle
33	chr3:159536400-159543200	Weak transcription	Esophagus	oesophagus
34	chr3:159536600-159537600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:159536600-159537600	Weak transcription	HMEC	breast
36	chr3:159536600-159538600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:159536600-159538600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:159536600-159538800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:159536600-159538800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:159536600-159539000	Weak transcription	Aorta	Aorta
41	chr3:159536600-159540600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:159536600-159541200	Weak transcription	Fetal Intestine Large	intestine
43	chr3:159536600-159543000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr3:159536600-159543000	Weak transcription	Pancreas	Pancrea
45	chr3:159536600-159543200	Weak transcription	Colonic Mucosa	Colon
46	chr3:159536600-159546400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr3:159537000-159537600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:159537000-159537800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:159537000-159538400	Weak transcription	Brain Substantia Nigra	brain
50	chr3:159537000-159538400	Weak transcription	NHDF-Ad	bronchial

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