Variant report

Variant	rs12490735
Chromosome Location	chr3:159489444-159489445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:159480986..159483259-chr3:159486958..159490196,4	MCF-7	breast:
2	chr3:159481165..159483510-chr3:159489072..159490902,2	K562	blood:
3	chr3:159487312..159489793-chr3:159503414..159505696,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10936179	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1107061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11715088	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12491535	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1497762	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1553081	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2010748	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2169305	0.87[ASN][1000 genomes]
rs3851359	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3889309	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3889310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4679863	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679865	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4680521	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680524	0.94[ASN][1000 genomes]
rs56107912	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62270387	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62270397	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6763138	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771478	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6780187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159483600-159493000	Weak transcription	Gastric	stomach
2	chr3:159483800-159493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:159484000-159494600	Weak transcription	Psoas Muscle	Psoas
4	chr3:159484200-159493200	Weak transcription	Lung	lung
5	chr3:159484200-159501200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:159484400-159493000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:159484400-159493000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:159484400-159493000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:159484400-159493200	Weak transcription	Fetal Stomach	stomach
10	chr3:159484400-159505400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:159484600-159500400	Weak transcription	Fetal Intestine Small	intestine
12	chr3:159484800-159489800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:159484800-159493000	Weak transcription	HSMMtube	muscle
14	chr3:159485000-159492600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:159485000-159492800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:159485000-159493000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:159485600-159489600	Weak transcription	Aorta	Aorta
18	chr3:159485600-159493000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:159485600-159493000	Weak transcription	HMEC	breast
20	chr3:159485600-159493400	Weak transcription	Fetal Brain Female	brain
21	chr3:159485800-159493000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:159486200-159492200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:159486400-159491000	Weak transcription	HUVEC	blood vessel
24	chr3:159486600-159489600	Weak transcription	HSMM	muscle
25	chr3:159486600-159493200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:159486800-159489600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:159486800-159489800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr3:159486800-159489800	Weak transcription	Left Ventricle	heart
29	chr3:159486800-159493000	Weak transcription	Right Ventricle	heart
30	chr3:159486800-159493000	Weak transcription	NH-A	brain
31	chr3:159486800-159493000	Weak transcription	NHEK	skin
32	chr3:159486800-159494000	Weak transcription	Fetal Heart	heart
33	chr3:159487000-159489600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:159487000-159490400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr3:159487600-159489800	Enhancers	Brain Substantia Nigra	brain
36	chr3:159487600-159493000	Weak transcription	Right Atrium	heart
37	chr3:159488400-159489800	Enhancers	Rectal Smooth Muscle	rectum
38	chr3:159488400-159490200	Enhancers	A549	lung
39	chr3:159488400-159494600	Weak transcription	Spleen	Spleen
40	chr3:159488600-159490400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:159488600-159491000	Weak transcription	Brain Angular Gyrus	brain
42	chr3:159488600-159492400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr3:159488600-159492600	Weak transcription	Brain Anterior Caudate	brain
44	chr3:159488600-159492800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:159488600-159493200	Weak transcription	Pancreas	Pancrea
46	chr3:159488600-159493200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr3:159488800-159492400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:159488800-159492600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:159488800-159492800	Weak transcription	Stomach Mucosa	stomach
50	chr3:159488800-159493000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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