Variant report

Variant	rs4694594
Chromosome Location	chr4:74143697-74143698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10938069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12507809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12647948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12649635	1.00[AMR][1000 genomes]
rs13121823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1913150	1.00[AMR][1000 genomes]
rs4403011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4413377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4463038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4694158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4694595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56349598	1.00[AMR][1000 genomes]
rs57705126	1.00[AMR][1000 genomes]
rs61020873	1.00[AMR][1000 genomes]
rs61741433	1.00[AMR][1000 genomes]
rs6446915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6446916	1.00[AMR][1000 genomes]
rs6446918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6813601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6822576	1.00[AMR][1000 genomes]
rs6824747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6855107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7377358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7657169	1.00[AMR][1000 genomes]
rs9993141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74125800-74149000	Weak transcription	Ovary	ovary
2	chr4:74126000-74153400	Weak transcription	HSMMtube	muscle
3	chr4:74126400-74147000	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:74126600-74147000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:74126600-74147000	Weak transcription	Fetal Stomach	stomach
6	chr4:74126600-74149200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:74126600-74152400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:74127000-74158600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:74127200-74154800	Weak transcription	Left Ventricle	heart
10	chr4:74127400-74154000	Weak transcription	Brain Angular Gyrus	brain
11	chr4:74137800-74147000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:74138800-74147200	Weak transcription	Spleen	Spleen
13	chr4:74140800-74144000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:74140800-74149200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:74141400-74147000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:74141400-74151000	Weak transcription	Pancreas	Pancrea
17	chr4:74142800-74143800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:74142800-74144200	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr4:74143000-74158000	Weak transcription	Aorta	Aorta
20	chr4:74143200-74147200	Weak transcription	Liver	Liver
21	chr4:74143200-74147400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:74143200-74148800	Weak transcription	Gastric	stomach
23	chr4:74143200-74154000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:74143400-74147000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:74143600-74147200	Weak transcription	Adipose Nuclei	Adipose

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