Variant report

Variant	rs61020873
Chromosome Location	chr4:74285950-74285951
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12507809	1.00[AMR][1000 genomes]
rs12647948	1.00[AMR][1000 genomes]
rs12649635	1.00[AMR][1000 genomes]
rs13121823	1.00[AMR][1000 genomes]
rs16849606	1.00[AMR][1000 genomes]
rs4403011	1.00[AMR][1000 genomes]
rs4413377	1.00[AMR][1000 genomes]
rs4463038	1.00[AMR][1000 genomes]
rs4694158	1.00[AMR][1000 genomes]
rs4694594	1.00[AMR][1000 genomes]
rs4694595	1.00[AMR][1000 genomes]
rs56349598	1.00[AMR][1000 genomes]
rs57705126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6446916	1.00[AMR][1000 genomes]
rs6446918	1.00[AMR][1000 genomes]
rs6813601	1.00[AMR][1000 genomes]
rs6814545	1.00[AMR][1000 genomes]
rs6824747	1.00[AMR][1000 genomes]
rs6855107	1.00[AMR][1000 genomes]
rs7657169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv879491	chr4:74275515-74292407	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74272000-74298200	Weak transcription	Pancreas	Pancrea
2	chr4:74280400-74286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:74283400-74287400	Strong transcription	Liver	Liver
4	chr4:74284400-74287000	Strong transcription	HepG2	liver
5	chr4:74285400-74286400	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:74285600-74286000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:74285600-74286600	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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